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Query: PF15471.6; F1S380_PIG/2-320; Transmembrane protein family 171, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SPVAAAESDGVHRDRHVSKLIFFLFVMGAILLCVGVLLSIFGFQACQYETLPDCSMVLKIAGPACAVVGLGAVILARSRARLQQSEGRLRGNQGDSDRAFLCGESRQFVQCLIFGFLFLTSGMLISVLGIWVPGCGSDWAQEPLNETDTADSESQICGFLSLQILGPLIVLVGLCFFVVAHVKKRNNLNGGQDASESEERQPQHMEPVQVTVGDAVIIFPPPPPPYFPETSAAAASQGPGADDLLPNESPPSYYSIFHYGTPPPEGQGVTSERDCDSIYTISGTAPTSETSHTPSLSSELPPRYEEKETAATTSLSPSSLast
1 -158.000PF15471.6; F1S380_PIG/2-320; Transmembrane protein family 171  ali  100  1SPVAAAESDGVHRDRHVSKLIFFLFVMGAILLCVGVLLSIFGFQACQYETLPDCSMVLKIAGPACAVVGLGAVILARSRARLQQSEGRLRGNQGDSDRAFLCGESRQFVQCLIFGFLFLTSGMLISVLGIWVPGCGSDWAQEPLNETDTADSESQICGFLSLQILGPLIVLVGLCFFVVAHVKKRNNLNGGQDASESEERQPQHMEPVQVTVGDAVIIFPPPPPPYFPETSAAAASQGPGADDLLPNESPPSYYSIFHYGTPPPEGQGVTSERDCDSIYTISGTAPTSETSHTPSLSSELPPRYEEKETAATTSLSPSS 319
2 -16.300PF15029.6; H0VXD9_CAVPO/9-242; Transmembrane protein 174  ali follow..  20  28.................................................................................................................AGATLLFSGIFLGLVGITFTVMG--WIKYQSVSH-----------FEWTQLLGPILLSVGVTFILIAVCKFKMQLCKESEERVPDSEQTSGGQSFVFTGINQPITFHGAPPPYYLQSMVNPCGLLPSGGAAGAMPSPPQYCTICNAAFVESEDYSSITDGRNSRSSLGADRLGEMQLEEEDYARFSSPPPYEE............. 230
3 -13.200PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51  ali follow..  13  1......................................................................................................NSGSQYALCALVGLVAL--GVVMIVWSLVPANTGFNNSSSGSGGDDGIDGKRNKASSVAFVLAGVAMLLLSLCLGLRNKQREQLRRQEIQNQRDAAREQEERETAEERAQRYAV--------PSYEEVVGSGQYPVRQSNLRPSVSQLPSYDDLVQVDGIHSPSATISTSSHRPGKLPMKNTGSSQPAAGISIEPLTPPPQYE.............. 213
4 -11.900PF15664.5; E2RC46_CANLF/29-168; Transmembrane protein 252 family  ali follow..  21  1..............................................................................................SSGSIFNCRGNLILAYMLLLGFVILLSGIFWST-----------YRQASKSKGVFTHVLRRHLSHGALP---------------LATVDRPDFYPPAYEESLDAEKQPCPTEGEVSDI----------PPPLYTEPGLEFEDAA------AHPEAPPSYEESVAGGVPAATPLQDAERQS............................................. 140
5 -10.500PF10177.9; W5KY66_ASTMX/13-159; Uncharacterised conserved protein (DUF2371 topsan)  ali follow..  22  5...........................................................................LRTKNRAENKRRRKARKKRKNDIVVVKGKCSVSGMAAAFGVLVLMVGIAMAVLGYWPRENLQRVNDATINSTKPIPPASRHVGFFNLKVFGPLVMGIGIFLFICANAVLHENRDKKTK.............................................................................................................................. 142
6 -9.580PF17359.2; A0A0C5S2P0_9MOLU/14-235; Family of unknown function (DUF5385 topsan)  ali follow..  13  1..........................................................................................................................................................SNSNFLTI-----LIIIIPIILIIVFIVRKKRRQNGDGPSTGNNQNKSDTNEVWTTIVIDSYVVKRPEPHNQMTKLQKQEYKEEIERIKALKTTDPNAYKQ----EMLRIKKEKRAKPKELYVVLFTTRNAKTKVVDEPRAFECEVKLVKINKKE.......... 161
7 -9.500PF13886.6; U7Q2T1_SPOS1/25-230; Domain of unknown function (DUF4203 topsan)  ali follow..  11  1.........................VGGVLMLLTGVVYALVGIRN---------MLHTFFSTAYLASL-GTTVLVIYVMSPPISNAIQGAYLVAAVCTGLILGGIAIVFKEITEGFGCLLGGFCFSMW-IFIVAFTIGAYAFYFSHWTRQYA------MACIAFGGATVTVMGIDTFSRAGLKEAYIWRLNDNLFPLGADTYPITKGIRVELAATILLF.................................................................................................... 198
8 -9.420PF09946.9; D5E996_METMS/8-119; Predicted membrane protein (DUF2178 topsan)  ali follow..  18  1..............................MLTIGFILFLIGLGFYILEP----AWIINPSGTGGAFIGAGVALFLITLREIRLKS---KGNIVEDERVFHIAEKASHKTLVI---LIVLEGTLMAFLGVT------------------------AFDIQAYPVVSLLFAITMISY............................................................................................................................................... 112
9 -8.680PF15105.6; G1LS64_AILME/13-201; TMEM61 protein family  ali follow..  20  8..............................................................................................................MTVSGTVLLVAGTL--CFAWWSEGDAGAQPGQPAPPTGRPVPEAPSPLLRSVSFAGGLLLLFGLLWSIKASTRRWDPYRLSRDVESSEKESYRLPELAAIPTYEEAMCCSLAPPTPAADPVEGGLKDSASGDALLGTQDPPSYESVI.............................................................. 169
10 -8.630PF00822.20; EMP2_MOUSE/1-165; PMP-22/EMP/MP20/Claudin family  ali follow..  12  72.......................TMILSTILSCISFLIFLLQLFRLKQGERFVLTSIIQLMSCLCVMIGASIYTDRRQDLHQQNRKLYYLLQEGSYGYSFILA---------VAFAFTFISGLMY.................................................................................................................................................................................................. 165
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.