current user: public
If you have questions about the server, please let us know.

Query: PF15606.6; RHSA_ECOLI/1298-1372; Bacterial toxin 34, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst PGLALDITMIASRGNVADTGITDRVNDIINDRFWSDGKKPDRCDVLQELIDCGDISAKDAKSTQKAWNCRHSRQSLast
1 -67.500PF15606.6; RHSA_ECOLI/1298-1372; Bacterial toxin 34  ali  100  1PGLALDITMIASRGNVADTGITDRVNDIINDRFWSDGKKPDRCDVLQELIDCGDISAKDAKSTQKAWNCRHSRQS 75
2 -6.470PF14126.6; Q5LC29_BACFN/2-148; Domain of unknown function (DUF4293 topsan)  ali follow..  14  120PLISIILNWLAVRAIGRDEVMVKAADRL............................................... 147
3 -6.250PF01883.19; Q6N8C9_RHOPA/6-75; Iron-sulfur cluster assembly protein  ali follow..  6  6...SLAKVATPRGVPLTQAGVLSEIAITDGKVYFSINVDAAEARAWESVRSDAEAAVRGTPGVKSA......... 68
4 -6.170PF04262.14; H2IVB9_RAHAC/9-380; Glutamate-cysteine ligase  ali follow..  10  17.GIERETLRVNPDGSLATTGHPESLGAALTHRWITTDFAEALLEFITPVDDNIEHLMAFLRDIHRH......... 81
5 -6.140PF14752.6; W5NCL1_LEPOC/34-634; Retinol binding protein receptor  ali follow..  14  499....LDISLLNRGVEGFDPGYRCYAHYLKIEVSQSHPVMKAFCGVLLQSPAPEGSAEQKIRDAEEG......... 560
6 -5.750PF04821.14; G8ZQM4_TORDC/41-358; Timeless protein  ali follow..  11  245..PLMEVMFYMVKEIDPKA-LIRNDPQKCGPDTSKEEHYSPVGLQLTELLEK---ERRLKKIVVQNTSTRHSRFG 313
7 -5.600PF14949.6; H3IMN4_STRPU/15-120; ARF7 effector protein C-terminus  ali follow..  19  46......................LQNRTMYDANGHLSSTGQDLCDCLGKDCPGCHYPCKDCGSIKCGPVCRCKRK. 97
8 -5.390PF13192.6; Q3AD42_CARHZ/1-76; Thioredoxin domain  ali follow..  10  28.NIDANVQKVQDIPEIMKYGVMSTPGLVINEKVVLSGRVPSKAELEKIIL......................... 76
9 -5.330PF18365.1; A0A0W0Z0R7_9GAMM/685-814; Phosphoinositide phosphatase C-terminal domain  ali follow..  11  44..............GATPTGIQS-IRGLMLDEHAGKNNVNRMEKIFAAVLSRPETDSSRTKETNSVYSR...... 97
10 -5.200PF02315.16; B1M2D4_METRJ/6-92; Methanol dehydrogenase beta subunit  ali follow..  20  14PALAYDGQTCKAPGNQPKPGFPEKVAGTKYDPKHDPKEVSKQAESIKQMEERNRKRIENAKKTGK.......... 80
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.