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Query: PF15787.5; B4GTF6_DROPE/27-302; Domain of unknown function (DUF4704 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TPHALMLQDVKAVVTHSIHCTLNSIGGIQVLFPLFSQLDMAHEGIGDIKRDPSLCSKLLGFICELVETSQTVQQHMIQNRGFLVISFMLQRSSREHLTLEVLGSFLNLTKYLVTCLSANSDLLLKQLLDHVLFNPALWIYTPANVQARLYSYLATEFLSDTQIYSNVRRVSTVLQTVHTLKYYYWVVNPRAKSGIIPKGLDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQMLISLMSEHPSSMVPAFDVLast
1 -84.900PF15787.5; B4GTF6_DROPE/27-302; Domain of unknown function (DUF4704 topsan)  ali  100  1TPHALMLQDVKAVVTHSIHCTLNSIGGIQVLFPLFSQLDMAHEGIGDIKRDPSLCSKLLGFICELVETSQTVQQHMIQNRGFLVISFMLQRSSREHLTLEVLGSFLNLTKYLVTCLSANSDLLLKQLLDHVLFNPALWIYTPANVQARLYSYLATEFLSDTQIYSNVRRVSTVLQTVHTLKYYYWVVNPRAKSGIIPKGLDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQMLISLMSEHPSSMVPAFDV 276
2 -10.800PF08045.11; E9DYC2_METAQ/1-287; Cell division control protein 14, SIN component  ali follow..  12  118.....LIQGVLLLHPPS-KTLFSREQNMNLLLDLL-----------EPFNCPAIQSATLLTLVVALIDTPSNTRTFEGLDGLLTVTSLFKSRSSREVKLKLVEFLYCYL....................................................................................................................................................................... 210
3 -9.660PF17822.1; G3S7I6_GORGO/1-229; Family of unknown function (DUF5584 topsan)  ali follow..  13  84..........LLAFTGGPPAGNFAAEYMEEVAHLL----------QDEELAPKIKILLLQSVACWCYLNPVSQKRAKSLQFIPILISFFEGRFESTIKSEINSTCYVLSVMTCNNLSCVKELKDHSALKYHL-NWSGWTENFAEVLYFLIGF............................................................................................................................ 227
4 -8.900PF04826.13; ARMX3_MOUSE/110-363; Armadillo-like  ali follow..  5..................DDTVLSPQELQKVLCLVEM-----------SEKPYILEAALIALGN-NAAYAFNRDIIRDLGGLPIVAKILNTRDPIVKE--------KALIVLNNLSVNAENQRRLKVYMNQVCDDTVTSRLNSSVQLAGLRLLTNMTVTNEYQHILANSISDFFRLFS-------------------------AGNEETKLQVLKLLLNLAENPAMTRELLRAQVPSSLGSLFNKKEYKEVILKLLIIFENINDNFKWE....... 210
5 -8.630PF17741.1; A0A151PBS4_ALLMI/1-268; Family of unknown function (DUF5578 topsan)  ali follow..  13  88..........SAASGHRYLIEFLEVGGVLTLLEILGLSQ----------LKEEDKKESIKLLQLVANAGRKYKELICESYGVRSIAEFMASSKSEKAQRQVQILLDSL--------GHGNPKYQNQVYKGLI---ALLPCTSPHAQQLSLQTLRVVQAIVGKSHPSI-------------------------------------------------VEAVLGVLRSMELEVQYEAIQLIKDLTSYDVRPALLRGLVALL................. 266
6 -7.820PF11841.8; W4Z9X2_STRPU/133-288; Domain of unknown function (DUF3361 topsan)  ali follow..  13  1................TFAQDFISNHGIELLVKMVE----------EGSQNGEPLSLTLKSFIELMDHNVISWDSLSANYVKKIASFV---NRSSGLDFQVTERALNILESSILNSTKLYNVIANEIFHNMT---HLENVQNPGIQQNCLALMNALCLKAPE.................................................................................................................. 132
7 -7.710PF05804.12; KIFA3_HUMAN/13-720; Kinesin-associated protein (KAP)  ali follow..  243..................QTLRKDYEKTFKKYQGLV------------VKQEQLLRVALYLLLN-LAEDTRTELKMRNKNIVHMLVKALDRD-----NFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLV---KMIPCEHEDLLNITLRLLLN-LSFDTGLRNKMVQVGLLPKLTALLG------------------------NDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNV....... 447
8 -6.800PF12460.8; H6C711_EXODN/528-954; RNAPII transcription regulator C-terminal  ali follow..  11  188........................................................QIPQTITQLILFASKSTSRGITQSCLLQIALYVNKHVETADLDFVDNLLSNTLSNLQDEPMDGSPPRDFNIRAAFTLIKALILRLSPKTDQYLTSLVGLLDEGHYPAEVCRKAAMGFATILSQIRLLA----PQRVFQMLTPLISEKFRASQSPTEKENYLIALSGILASVPSNIVMPELPTLLPLLLDVTDQMVKTATLETLAVVISNNPAAL...... 411
9 -6.660PF07304.11; H2T2W4_TAKRU/58-209; Steroid receptor RNA activator (SRA1)  ali follow..  11  33...........................................QSQPEADGEPDGDSVLSVLNCALTACRQVVKEQVCNDVAKRLRLLEDSWKGGKLSLPVRSRMDTLSQELQSGHWDAADKIHLSLMVDHVTEVSQWMVG--------IKRLIAETRKLSPELLEPLK........................................................................................................... 150
10 -6.570PF10487.9; G3AS50_SPAPN/57-968; Nucleoporin subcomplex protein binding to Pom34  ali follow..  568...........................LEVILRLLEQG---------HSRNVDILVSVIELLTNVMPFLSYRIWPYLSKSVLGFAATIFGAIEMVNGDYEFTIALIKMTESLVQNCLSLDQDYPEKHLINLFESFIYCRFNKSYQKMEMGVLILDIL---------------------------------STILATVYGIDPDTPVEHKATKVFASSAVRILDAFLVTDKDSSRAASPILTMIESLSQETWIRCCLSYSHLLITIRS......... 799

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.