current user: public

If you have questions about the server, please let us know.

Query: PF16134.5; E9CUD7_COCPS/133-865; THO complex subunit 2 N-terminus, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730
# Score Template Links and tools%idFirst LTDDRIKNWSSTGKQQVVEVGKEACSNVDTITLASLFQEVIQSAFECRIPPVEGGAVVKQIIGERSDSNDGDRTAPYLAFDSHSIFLDTLSILTDADSSRENLRPLAFATGISPSLMRLQLDTPLLQALGLIRDTFGRMGIRKQTNILYRQSNYNLLREESEGYSKLLTELFTTSNNEPPSSEVVEDTFERVKAMIGAFDMDVGRVLDVTLDVFAAVLVKQYRFCVKFLRASSWWPKEDNAPEGGIGLGLPKWALPGSPGWSTTDEEREEALRLNEHRDRLFWDRAKQVGIKAFFEIGRSLASDSDNHMLVSDIDVETRDETQKWIEQTGTLPPKGNRVAAQLLGFKLRFYSSDARNATDVLPDNLIYLAALLIKVGFISLRDLYPHLWRPDEEMEVLKEEKMKEKAEREKAGRRGAGMMNALMTAGALADDTLTLPARSRGLETRSATPAKEQEQDKDKTAPQKTEEKEQLPEPADQKVLLLKSLLAIGALPESLYILGRFPWLLDGYPELPEYIHRILHYCLHKVYQSVQPLPSRSELRDRKKIVGSEQGAVSQGRVRLSDAAPQRVLRWALLDKQDNDGTDYRFYWDDWTDSIPVCQSIDDVFALCSSFLNLSGVKIGQDPSLLTKLARIGKHSLKEDVSESNRTRWMDLCRRLLVPALSLTKNNPGVVNEVFELLNYFPQHVRFSIYAEWYFGQTSRLPDIKSAFDQARFETKDALKRLSKTNVRPMARLast
1 -183.000PF16134.5; E9CUD7_COCPS/133-865; THO complex subunit 2 N-terminus  ali  100  1LTDDRIKNWSSTGKQQVVEVGKEACSNVDTITLASLFQEVIQSAFECRIPPVEGGAVVKQIIGERSDSNDGDRTAPYLAFDSHSIFLDTLSILTDADSSRENLRPLAFATGISPSLMRLQLDTPLLQALGLIRDTFGRMGIRKQTNILYRQSNYNLLREESEGYSKLLTELFTTSNNEPPSSEVVEDTFERVKAMIGAFDMDVGRVLDVTLDVFAAVLVKQYRFCVKFLRASSWWPKEDNAPEGGIGLGLPKWALPGSPGWSTTDEEREEALRLNEHRDRLFWDRAKQVGIKAFFEIGRSLASDSDNHMLVSDIDVETRDETQKWIEQTGTLPPKGNRVAAQLLGFKLRFYSSDARNATDVLPDNLIYLAALLIKVGFISLRDLYPHLWRPDEEMEVLKEEKMKEKAEREKAGRRGAGMMNALMTAGALADDTLTLPARSRGLETRSATPAKEQEQDKDKTAPQKTEEKEQLPEPADQKVLLLKSLLAIGALPESLYILGRFPWLLDGYPELPEYIHRILHYCLHKVYQSVQPLPSRSELRDRKKIVGSEQGAVSQGRVRLSDAAPQRVLRWALLDKQDNDGTDYRFYWDDWTDSIPVCQSIDDVFALCSSFLNLSGVKIGQDPSLLTKLARIGKHSLKEDVSESNRTRWMDLCRRLLVPALSLTKNNPGVVNEVFELLNYFPQHVRFSIYAEWYFGQTSRLPDIKSAFDQARFETKDALKRLSKTNVRPMAR 733
2 -8.740PF04121.13; K1WK05_MARBU/214-981; Nuclear pore protein 84 / 107  ali follow..  1.....LERWEQEVQTDLLRRLVQLRFPEPDTKGQSL-HELWEDFLGKDELALERKTVLRWLKDSAEESGEDIDVLVHDLQQNADRGDMIAHGWIHTKGAIKSKRMNPLLNRNVPEDLITQLDPDAMTRQGKCLQKQDEYFERAIWLGCYELLRRGKSADEIREWCV--SALWRRMCFALARNGGGDPYKKAVYGILS--DIDSVEAVDFVFANYNALLRNQFDNYLRNVRPF----SNATSNFESFDAIQFHSPSDPKSAGRRLIETLKAKRETAAETLQPMKMLQGVLIADTFSNFIYQQKAANKLEPSNLFPATSKSPEDEESTKYVTLNDHDSLRVLAHVIIFMGLGLDLGGAANVTEVENVIVAYISFLRLSGKEELIPLYCSQLSGKRKYAILCRNLIDVTDYNQRVTQIRLMRELGLDAQEFVSSDYPDRTTGYPAANFRLFSQSSADGHSRKLTQPLHNFFGPDPEAVDRIDMLLIRSLLWSETFTLGTMLYMRF--FKNMRLNAARSMSISVEYKNVVEVKTRAILGDTYDYIGLENEEDEDITEVLDGSADGKRHLKKYMVAQAKSFRELESLIDSLDYLETCTSLRVLLSEQKEYKRRLHVAVE----------GTIAGFEHLLKGWLVTCQNEDFEEE-FQNLREAYLPEMALSRQHLMTCMDISTVI----AEEDSDLLALFVKT----------------GKIQELVDKLAAAS...... 768
3 -7.720PF05327.11; R9ACU9_WALI9/30-630; RNA polymerase I specific transcription initiation factor RRN3  ali follow..  4................................................................................................................................................LNKFYVSFVNDAIEKKKEGYEELISQFTS---TGVHEYDKLKPWLDALANVISHLDKSHLPLVEAIMSL-PSFVSTYMAFVSMLISAHPQY-----------------------------------TKLLLAKVIKGLTHQAGSKALENVEHVPENERLTRRIVFDRL----------HGLLNKLLDLVPTLPSLLQPILIRHFPHKRENKVQQVTYM-RNLLSIISYCLTDEIFGL--IIDRTIQIDVEIQVELDDLDEELEDETEAIFENEPDIFERSVDRTYSDEESSDDSDDEFGFLSDLSSDDGLSDNGSQEAPMQVSAIKDLVQKLDGMLYMIRTILPTFRSRYTQFIL----KYSSYNAHFADIFQGMLLSKANEEPSVTRVVAASYLASYVSRAKFIDANATKHVVGLMCDYIANELDNIPQPITNFRLNTYSVWY---------------AIVQAVFYIFCFRWRDLMLANDDETVFDHAEALPTGSKTWISGLDVLQRAILSPLNP---LKVCASTVVNQFAKVSQFAGFLYCHSIIES........................................ 520
4 -7.490PF07795.11; I1M4G8_SOYBN/18-248; Protein of unknown function (DUF1635 topsan)  ali follow..  17  1....................................................................................................................................................................................................................................................................................................................................................................KSMEELRQSLIYTTLEL-DEQLLNLKDLLSKTIRERDEAQEKCQRLLLEKLVFQQQLQHAAPVSGISSIEDEPRRGIDSNNGHSSSDCEESIVSSPVIDHLPQPQPQSMIELTPDKPLP--EKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLES........................................................................................................................................................................................................................... 169
5 -7.030PF11894.8; C5DMA7_LACTC/4-1647; Nuclear pore complex scaffold, nucleoporins 186/192/205  ali follow..  636........WFFRLTISDDSYREAFESILTHFQDITGFLQLLNSLLKVRTKSTNGYLEFGLLQFPPKLGHGYRKLYFDYVFHGILAQSNKLPNPAERAAIHKPILEILSS-------ALSSFDYSVILNSIPSGSNLDELVVTDNFLTYAMESSTTAVLNEENVFKNLLQNASFGVEKMGSITEEDCQSLALPCLAL--------STINQVLTIQETYV----EELCPIVKKSASKNYFIPKDFGLHGLRSFYDAISFDLPLIVGKIASNSLDILDKISTEMKGRDSQAIVKDKLLSVFDSVD-ESARIKQAFINQLQTSITNYDFISKNLSYTDKQPTVAHFLLGLQIGNTISLGPDLSTFVTSGCSVLTSIILQSSLMVLSEILLKLCKNSATSKIVLRHMSESDFFETILARDPKVDVNTRWSGEVFAGNSAGDSLGFIKQTSTGAFLSFLSYRSFALQYLSLDIHGLSGESLKSRIKSRIDLLISNYLQPPRLFFLDALNFDARPSPHETLKGLKVLSGICSELESLIRLRTQFLGKHLPLNFHEETITNKETLDRISGAEAATIEKHLTDYMSFEQFKSLQLSLLHSWVQLVQVVSISDFILRLFEAIVPKINDYVELDVCYSEELVSLCVFLYDLYQKDQKLNNGEHTADGRLIALFLAC---------INGIRS--TLALRSDFYIRFLVSIMKEVNTAKQVLKTLKLTSERLVEVVCNDAIS.... 1414
6 -6.950PF14838.6; H3BCJ7_LATCH/231-925; Integrator complex subunit 5 C-terminus  ali follow..  3.......................................................ASVVGILGHL--ASRHSENIKQELLKMFHESLGPVREQQQKATVPFLLQLAVMSPMLLSIILVDSLKQSVLNQLQQHFAVMPREDLENMVSLIV-----HLICQTSNGAYRILQFLINTAMPASVITTPGLAVHDGVREACDKIQLLLLNLQKLVYNRTSTNLIDPAPRVVPFLDEL----KNHIKDLCIETLKLERKRYLWQHQLLGLLSVYCNPSCATDAIFYMLTLAKTQEELSLVAQLHAVLTSSMAGLLPTTIKKCISEQHTIQLLNNLALIIQWEKQEVSQIVSMHLYDFGQLLLHRNIEVSEAASLLLSVASMPKAIKPALLMTIVR---WVLHRKCNSGISHATRLLFKLSGICSMTLKAILQQLVEGALRRGNARLFGGTADLFIVNESSLEDIKTSLLDVNCKFGTAVNFSGSIWSVFHAIIGQGLKPSSVVLRKEKEEIVYNIQHFMNLIIQCCSGG------------------------YHTDLNELQPNMMPVNPEAAKTVAVVVVEYVCQDVTNSELAWPPEERDIQIRKCFEE---LLFKLLQFVAPALCYCSVVLRGLLATLMAHWEASRDNVTTSTLIACMGE-IFHQLAPFE---LLLLSVWEYMK--PLPQKFTFSAE------KGLFYRDFSRDGDISKYLNVLHSVLHKNIDKL.. 695
7 -6.910PF02324.16; GTFB_STRMU/269-1074; Glycosyl hydrolase family 70  ali follow..  10  1....LLMTWSQETQRQYVNYMNAQLGINKTYDDTSNQLQLNIAA-------ATIQAKIEAKITTLKNTDWLRQTISAFVKTQSAWNSDSEKPFDDHLQNGAVLYDNEGKLTPYANSNYRILNRTPTNQTG--KKDPRYTADNTIGGYEFLLAN-DVVQAEQLNWLHFLMNFGNIYANDPD---------------AN---FDSIR-VDAVDNVDADLLQIAGDYLKAAKGIHKNDKAANDHLSILEAWSDNDTPYLHDDGDNMINMDNKLRLSLLFSLAKPLNQRSGMNPLITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINPNVVGYSFIKKAFEIYNKDLLATEKKYTYNTALSYALLLTNSVPRV--YYGDMFTDDGQYMAHKTINYEAIETLLKARIKYVSGGQAMRNQQVGNSEIITSVRYGKGALKATDTGDRTTRTSGVAVIEGNNPSLRLKASD--------RVVVNMGAAHKNQALLLTTDNGIKAYHSDQEAAGLVRYTNDRGFTAADIKGYANPQVSGYLGVWVPVGAAADQDVRVAASTAPSTDGKSVHQNAALDSRVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWG------------------------------------VTDFEMAPQYVSSTDGSFLDSVIQ----YAFTDRYDLYG-------------------TADDLVKAIKALHSKGIKVMA. 660
8 -6.810PF12578.8; M3YI62_MUSPF/565-696; Myotubularin-associated protein  ali follow..  16  71................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VLLPHLSGTH-------KLWK-----------LCYFRWAQINLGGFITAFHKLSLLADEVDVLSRTLRQQRAGPL.. 131
9 -6.780PF14750.6; D2A4V3_TRICA/20-1066; Integrator complex subunit 2  ali follow..  10  311.............HVILAASVEGHLLDSLVVQGSALLRLYLRGIAAIKFQEDEVTALVR-LLTSHPSPTPAGVRFVSIGLCMLIACPSLISLQEHERRSIEWVQWLVKEEAYFESLMAIHFHSNQLSAICDLVCATLGMKIPIRHNNMTRMKQVEIFTEQVVTAHAVKVPVTNSLSANMTGFLPIHCIHQLLKS--RAFAKHNVNIKNWIYKQICTSVSPLHPVLPMLVEVY-------VNSVIMPTSRNTETNKPLSENEIRRVFQSSIFGQYFDHKKSIFTMDFDLNSENQDVVVDGTSLTPQLLLLYYLLLYEDCRLVNAHILAAFNRKIKLYSSEFLSELPIKY-------LHHAQKDQSSYSGLFGPLLK-----LATHFPHLTLVEDWLDD---------MSIKTEHKPTHVTQISVIEAFNDLDTNPSKCAKLMQTLLKQQAIDIWPFAEIFTQFARKILNDNVPRYLQDLYRDVWLRFLTRIDVAEDPLQIMRCDERVFRCAPLYAIVLRVLRASLRSQLMQHLQANPRLDHAGQVLNESDREEMCRATIAAQESAAVQMLLETCIETDEDRTIGGQKWALQEVRSLV--CSYLHQVFTMLAKLVHFQGYPSELIEVMVKGVMHICLDFLQELMQQPSLDKQIHLCIQYALPSLNLCV----ALNLLYALLGSLSSSQRVRLFRPILPALVR----ISEAFPPLVDDIVNLMMQLAKVCKSQAS. 1047
10 -6.570PF08626.11; C0NZX0_AJECG/5-1447; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit  ali follow..  10  8....................................................................................................................................................................ARLRALLLPVGNIKRSRFLNLVKRLQDQNVV---------RLGDVSRNAFSPMAFPTGMIVYDLSISVPPISHLDLYPFEIFREPLVIIAIADGTELPGPPEGTGTYSQTQSNGTKPCNYPTVEGLQLLQQELNTLKDSHPKSLVQQLLVFDYAAVSKLVTGPDTVIWVPRPEAARSTTVKTVMCDITSRLLGELSGLAERIQEWPTVESPKASSWGPRRKPEVRPPVSEKLQHRMTMPAQLPGANGTFVDASDTNFQPAEHDSPTTFDEITRSIQVSNRVTSSIKASSKPGSKEHSRERMSASERSKSRVKGRLNIVMGTLLQAGRWPDSLKELAEYIWHAKALESIL--QCLLMLGWAGMDFRIPQICYPTADKFSKSVSQTPSLSHTELYSIGQSNPENRRVSLQNLANLLPDLANNILNLYTR-DEPVPQLVFSETVIRLARILATVYIRDGSLDDSALGNI--VMNDSLKFVRSQERPRGTVSLRKSDIASFLFRA-----------SLGTDVPITDSTPILVG----MASVLSSLGLDRKNA------VLQLLFSILIPGLVQ 575

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.