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Query: PF16314.5; Q5LHM9_BACFN/5-659; Domain of unknown function (DUF4954 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YRRLTEDEVLQLKSQSCLADDWNKVAVAEEFTTEFVHHTRFSGEVKLGVFHSDFILPGGIKKHSGLRHVTLHNVTVGDNCCIENIQNYIANYEIGNNTFIENVDIILVDGLTQFGNGVETAVLNETGGREVLINDKLSAHQAYILALYRHRPELISRMKEITDYYSNKHASAVGTIGNHVMILNTGSIKNVRIGDFCRICGTCRLYNGSINSNESAPVHIGHGVICDDFIISSGSHVDDGAMLTRCFVGQACQLGHNYSASDSLFFSNCQGENGEACAIFAGPYTVTHHKSTLLIAGMFSFMNAGSGSNQSNHMYKLGPIHQGTLERGAKTTSDSYILWPARVGAFSLVMGRHVNHADTSNLPFSYLIEQQNTTYLVPGVNLRSVGTIRDAQKWPKRDKRTDPNRLDYINYNLLSPYTIQKMFKGRSILKELKRVSGETSEIYSYQSAKIKNSSLNSGIRYYEIAIHKFLGNSIIKRLEGINFKDNEEIRRRLKPDTEIGVGEWVDIAGLIAPKSEVEKLIDGIESGEINRLKSMNACFAAMHDNYYTYEWTWAYHKIQEFYGLNPETITAKDIIAIVRAWREAVVGLDRMVYDDARKEFSLSSMTGFGADGSRDEMKLDFGQVRGDFESNPFVTAVLKHIDDKTALGEELINRILast
1 -171.000PF16314.5; Q5LHM9_BACFN/5-659; Domain of unknown function (DUF4954 topsan)  ali  100  1YRRLTEDEVLQLKSQSCLADDWNKVAVAEEFTTEFVHHTRFSGEVKLGVFHSDFILPGGIKKHSGLRHVTLHNVTVGDNCCIENIQNYIANYEIGNNTFIENVDIILVDGLTQFGNGVETAVLNETGGREVLINDKLSAHQAYILALYRHRPELISRMKEITDYYSNKHASAVGTIGNHVMILNTGSIKNVRIGDFCRICGTCRLYNGSINSNESAPVHIGHGVICDDFIISSGSHVDDGAMLTRCFVGQACQLGHNYSASDSLFFSNCQGENGEACAIFAGPYTVTHHKSTLLIAGMFSFMNAGSGSNQSNHMYKLGPIHQGTLERGAKTTSDSYILWPARVGAFSLVMGRHVNHADTSNLPFSYLIEQQNTTYLVPGVNLRSVGTIRDAQKWPKRDKRTDPNRLDYINYNLLSPYTIQKMFKGRSILKELKRVSGETSEIYSYQSAKIKNSSLNSGIRYYEIAIHKFLGNSIIKRLEGINFKDNEEIRRRLKPDTEIGVGEWVDIAGLIAPKSEVEKLIDGIESGEINRLKSMNACFAAMHDNYYTYEWTWAYHKIQEFYGLNPETITAKDIIAIVRAWREAVVGLDRMVYDDARKEFSLSSMTGFGADGSRDEMKLDFGQVRGDFESNPFVTAVLKHIDDKTALGEELINRI 655
2 -7.070PF04519.13; M9XFD8_MEIRD/14-112; Polymer-forming cytoskeletal  ali follow..  10  1..............................................................................................................................................................................................TYLSEGSEIEGNLRAPGNTRIDGVEGDLEIGSNAQIEGDQIKANNIIVHGQVSAQVIALGKLHITKSARVEGDVRAMSLDVEAGAV........................................................................................................................................................................................................................................................................................................................................................................................... 93
3 -6.780PF13229.6; A8XCU4_CAEBR/377-555; Right handed beta helix region  ali follow..  1................................................................................................................................................................................................LGIFINTDQQINIRRSTAYSNNGTGIYVTSEVTLENVVVNANGFYGKRLEENKFQMDGVNVSAAKIGIANSRFHDNKKGGVR---------ISGQFQSPNIIFRDCRFLRNSGEIIQFNDFKNASLIMDKCEFVSSNYIDFDG................................................................................................................................................................................................................................................................................................................................ 155
4 -6.580PF08480.10; Q8TNF1_METAC/197-388; Disaggregatase related  ali follow..  2........................................................................................................................................................................................................DDIEVCNNVIYNTALSGILVFGSGNYANVHIHHNQIYNTGISLSSEVTGGVLAEGFNGLIENNVIDGAY--GAGIVQDRAYYSAPDGSGYVITVRNNIITNTYMSPAGEGYGICNLLTDTHSFVLQNNSFYNNAGGDYTGVEASPSNINSDPQYADRDKHDYHLK.................................................................................................................................................................................................................................................................................................. 168
5 -6.330PF11348.8; A1AQ79_PELPD/7-263; Protein of unknown function (DUF3150 topsan)  ali follow..  2...................................................................................................................................................................................................................................................................................................................................................................................................................DQMILVVLNISLWQGRKALQAGDLATNGIDVSKLPPGTLATLGSKRIISPDALKVFLALKREAVTLCLKNGVRF----------------------------GSNGYAIPREKVGELSRELKRLK----DEFETAKSDFLSVYEQEVENWIDSNPEWAPIIRSAVDSPSHIQKAINGLDEEVNSLYGQLCQEVRFAARRAFEYTFGKQEVSQKALRPIRTIRSKLTGLLFL---DPSIAETIQVIDDTLEKL 236
6 -5.970PF10456.9; SNX9_MOUSE/358-593; WASP-binding domain of Sorting nexin protein  ali follow..  1.....................................................................................................................................................................................................................................................................................................................................................................................................DEKEWKTGKRKAEKDELVMIFSTMEPEAPDLDLIEIEQKCDAVGKFTKADDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLAAVFSSSGYQGETDLNDAITEAGKT--------------YEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGAHK-GAIEKVKESDKLVATSKITPQDKQTMVKRVGTMSYALQAEMNH--------------FHSNRIYDYNSVI-----RLYLEQQVQFYETIAEKLRQALSRF 235
7 -5.880PF16828.5; F0II07_9FLAO/459-607; GAG-binding domain on surface antigen  ali follow..  5........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YKRLIEETLEAYEKLKLELEGLEKNMQDKTWHEGIRISRSATKHYKETKDTASLTDLKKTYEDLHEIMARIAEQYRKK-YPNNTEI-------EKLIKENFNGEYTNLDGPHLTNYLNNNIVTAFNKIIDIVNSL 148
8 -5.730PF12207.8; F2FA94_SOLSS/65-224; Domain of unknown function (DUF3600 topsan)  ali follow..  10...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SFDNVKKHIANITIKSYLLFDAKLSQAKGDLGNEQFEQFKEILYVITDAKLEFGDKNGNID--SKVSEEKLEEIKAAIYEIQPYFDKLNNQPSSKEILTAEEYEQYIQALLTFETEMVPEGAQEEFLKARAVLDYVNEK. 160
9 -5.730PF06600.11; Q9CFQ9_LACLA/5-103; Protein of unknown function (DUF1140 topsan)  ali follow..  3..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................VQNYQIKLLKIIFKEIDNLMTKKENADINAHKLAENGKSVRTSAYWKSVGNAEFYIKEIYQKLSTLAEDRLFHWDHLHQEQLKFVSKYPKVMEKY...................................................................................................... 99
10 -5.710PF02316.16; REPC_BPMU/23-165; Mu DNA-binding domain  ali follow..  11  3........................................................................................................................................................................................................................................................................................................................................................................................ADGMPGSVAGVHYRANVWTKQKKEGVKGGK--VEYDVMSPTKEREQVIAHLGLSTPDTGAQANEKQDSSELINKLTTTLINMIEELEPDEARKALKLLSKGGLLALMPLVFNEQKLYSFISQQSIQTLMMLDAL................................................................................................................................................. 140

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24