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Query: PF16349.5; R6X3S2_9BACT/822-990; Domain of unknown function (DUF4978 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EIIDYYHHVGAAVKQSKYVTWTRLNCVSYETSGRTTANENLRNNGGTNIDFVGVDIYGTNANSVKGDLSGYLGTKGNFRMIMEIDAKDSNSPIYQMAALAGDKAFNYYNLGPVNGLYSNSGHVLTERSHINLVRQRNQILNLANQDIAKMKQGGLYVYNYAGNSTLast
1 -109.000PF16349.5; R6X3S2_9BACT/822-990; Domain of unknown function (DUF4978 topsan)  ali  100  1EIIDYYHHVGAAVKQSKYVTWTRLNCVSYETSGRTTANENLRNNGGTNIDFVGVDIYGTNANSVKGDLSGYLGTKGNFRMIMEIDAKDSNSPIYQMAALAGDKAFNYYNLGPVNGLYSNSGHVLTERSHINLVRQRNQILNLANQDIAKMKQGGLYVYNYAGNST 165
2 -7.990PF00827.17; A7SWD4_NEMVE/2-191; Ribosomal L15  ali follow..  11  2.AYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRTRPDKARRLGYKAKQGFGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSVGQDSIYKYFEVI----MVDPFHKAIRRDARINWICKTHKHRELRGLTAAGTKNRGM.......... 173
3 -7.460PF03610.16; PTNAB_ECOLI/4-117; PTS system fructose IIA component  ali follow..  12  3.VIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVE.................................................................................. 97
4 -6.800PF02449.15; Q5WC61_BACSK/18-400; Beta-galactosidase  ali follow..  16  212QTIDFYRNEIEPLRELTPEIKITTNFMGNYPHMRPFLGLNYRK--ADELDVISWDSYALASDVAFVHDIYRSLKGGQPFLLMESTPSLVNHELSSLQAVAHGAAILYFQWRKSGAVVDHVGH--EHTRVFQEVAQLGRTLEQL...................... 383
5 -6.750PF00316.20; F16P_KLULA/19-216; Fructose-1-6-bisphosphatase, N-terminal domain  ali follow..  7  21EFSMLLNSLQFAFKF----ISQTIRRAELVNLIGLAGASNSTGDQQKKLDVLGDEIFINAMKASGNVKVLVSEEQEDLIVFRNSPGKYADGSSNLDAGVSVGTIVSLFKIHENQNGNSGEEDSEGTINDVREMVAACYTMYGASTHLVLTTGAGVNGFTLDNNL. 190
6 -6.570PF00314.17; M5C643_THACB/23-251; Thaumatin family  ali follow..  13  1.............NFCQFTIWPAIFTDLNAGSSALSAKTGWEAPAGSKVSFTVPDNWRTGCDFTKNAGIESCVTGGCQGGLECDARVVADPPVTYAEFTLDANGQDHYDVSLVGGF................................................. 110
7 -6.510PF09573.10; B0VFH5_CLOAI/9-237; TaqI restriction endonuclease  ali follow..  11  90....FKKGFRARMYRTWVSVLTQMDFCYLFQFLCAREGKILSLECNAALDARGVDAKVGNI---------------GFQVAKISNRKEARSASKKKTLVT-------YAVFNIEEFEKKIKSP-DKKGYQNSLKAFQKYFIRL--------KNGFVVFG...... 218
8 -6.160PF13756.6; Q2KE68_RHIEC/148-257; Stimulus-sensing domain  ali follow..  15  4......EKVAPVLRRLISPTRTRARIFDADANLLLDSRHLYSRGQVLRFDLPPVEEEKQTWSDWFATLFNKALQPGNLPLYKEAPGGDGSIYPEVMNALTG................................................................ 98
9 -5.950PF16127.5; I0H5J5_ACTM4/139-260; Domain of unknown function (DUF4839 topsan)  ali follow..  13  29ETIAFNGSIVNMMPHGDYK--TRYDL--------LLGPGSKGPQTTEGPAFKFEDVNVSDLNLTGDNIPATVGEGDTFRFVAEVREFNPVQCSFYLDPIS................................................................. 118
10 -5.900PF18680.1; K6UVQ8_9APIC/58-237; Plasmodium host cell traversal SPECT1  ali follow..  13  29...ELSDDVAKSVSQYSYDTEEKLNILVGLVNEFVENNKGVIFKSSEEKKKVEEHKFKKMCDLILEKVKTVVELSNNYRIILKFGKGDRKSDILDKVKNDDSISDALYEDVESKNANVSSLVNFISPIYESFKQKLNALIREVSSDL.................. 180
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.