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Query: PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MNKILKTMALLAVPATVAVSCKDDGMDVKFTDKGPEMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAKLLFDGTSVSDLTIRTKTYGTYDAAIFVPLLKDIPDGTAEITFTAQNTGLGITELast
1 -66.100PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali  100  1MNKILKTMALLAVPATVAVSCKDDGMDVKFTDKGPEMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAKLLFDGTSVSDLTIRTKTYGTYDAAIFVPLLKDIPDGTAEITFTAQNTGLGITE 123
2 -36.300PF15418.6; Q5LII3_BACFN/21-149; Domain of unknown function (DUF4625 topsan)  ali follow..  14  1...................SCSKEDE---GDTIKPVIDLLEPEEGAILSHGVHFEMNLHDNEAIASYKINIHNNFDGHSHTTDKAGQKDAYVHNHDIKIPADATPGNYHLMVYCLDQSGNETY 122
3 -20.300PF12988.7; Q8A4K6_BACTN/14-147; Domain of unknown function, B. Theta Gene description (DUF3872 topsan)  ali follow..  12  2....IMILCCMAAALFCFTFCSDDLDIQQEYP---TVEAMPVADKIAGGQTVEIRLEITEEGNFSGTLYTLRYDGTVLKPNDRYLLSEKKFRLYYT----SRSTNEAQTIDLYFENNWQDVRQ 126
4 -19.000PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  11  1MKKKLLFILSLTFIGISCFACLDDETKYVTQKKTTAFAVAVNNVQTGTTSYYTHKIEIGTIENANVITGVDYTLMDGASISPDPATFIQNWQKEQKVTVTTNNQSTTYTIVLPKYDETLKDI. 134
5 -17.700PF16323.5; Q8A5X7_BACTN/17-123; Domain of unknown function (DUF4959 topsan)  ali follow..  1..................ANCAGDYEAEPRGTNDGKAPAPITNISVKNVGGAIIKYTPSDDVDLLYVKAIFTNTRGEQQEVKSSMYVD-------SLVIEGLGDTQKREVKLYSVDRHENYST 99
6 -15.800PF14725.6; C7PJA3_CHIPD/17-324; Domain of unknown function (DUF4466 topsan)  ali follow..  12  1...................ACKDKQYAIPAKNELQNDCIKRTLGPNVAGLNIEFAYAIALPAARGKIQIGDPAVNEGNATKVTFTKDTNAVTLRYFYVIPKSAQGKEVRFTFSAKSSNGETIS 138
7 -15.500PF16407.5; F9ZCN6_ODOSD/19-184; PKD-like family  ali follow..  16  1....................CYDDKGNNDRFVNTIEVEPFQDSPWAALGDTVRYKPVLHFASGNDELDLAYE----TFAGKTIGDELNLEWIVD---------TVATGQVILRVTDRANGLV. 91
8 -15.400PF16820.5; D4IN02_9BACT/104-173; PKD-like domain  ali follow..  15  1...............................PPVISLALPSQGLKVVRNTDYTFTPDIQHSDV-EGFKIEWVREGKIVSTENTYTFNEKE--------------LGVYTVTINASN....... 70
9 -14.700PF16389.5; Q8A3Q2_BACTN/20-216; Domain of unknown function  ali follow..  13  1....................CSGQLDTIQEYLDAGETIYAAKMDSVDI-NRVEVTGLLKYGMDTERCVIHWTPDNDSLVVPVKRIDPVDTFRVFIE-----NLPEGTYQFEIVTYNKSGYRS. 100
10 -14.200PF12245.8; W8CUG4_RAOPL/139-263; Bacterial Ig-like domain  ali follow..  41.........................................................VKAATGFDKATLQVINPDNSVYSITDMDYDGGSSSLSAPWTMPTSDADVEFRFRVTLYDKAGSRKV 115
11 -13.800PF16383.5; R5CWT1_9BACT/1-176; Domain of unknown function  ali follow..  14  1MKKNHFSLMSLAAGVLLFASCAQDGFDEESFDSGVYNTQLEAPSTTASADGTQQTISWPVVYGAGGYHAILTNTTAGEVLIDSVYDGTS---------AVARVEDNNYELSLEVLGNEERNNT 127
12 -13.200PF16390.5; R6MWU6_9BACE/1-77; Domain of unknown function  ali follow..  23  1MKKFFHYILMAALIVIPFISCSDDDETINE............................................................................................. 32
13 -13.000PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan)  ali follow..  1......IFSFLTAAGLLFAGCHQPDELLPSVSRN-TAQFVKNNSEGAAEFYGEFKGYPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDDNVTVDPAVLYMNLNITVTDQLKQKKV 125
14 -12.800PF14466.6; R6Y7E1_9BACT/10-135; PLAT/LH2 and C2-like Ca2+-binding lipoprotein  ali follow..  16  2........IVALFLGLILVSCSDDDDQGGVIDTGIKIVVEQSGDIDAFELGLVFPTKLYDEDGKYLGESHSVTRMEDAKVSCQTGDDAFFMTCAGSVTSTSDVSGKKLKVLVTAYIDGKEVNQ 125
15 -12.600PF09136.10; P70745_ARTGO/718-806; Glucodextranase, domain B  ali follow..  16  1..................................PALTINSPAQLTTADSNTTVSGTTAAAKVYVSVN-----GNIFEAPLTPAGDGTSTFSVDLAL------PATKNTVTVAAVGSDGGTAV 79
16 -12.600PF13750.6; A0A0G3Q3C4_KLUIN/549-705; Bacterial Ig-like domain (group 3)  ali follow..  15  41..............................DNTPPTVAIKPVKDDTVVYGLENLRIALADNTTPRITRLQLVGGPTADNELTWSPAGKDTYMPEYPRLFPNFEPSENYSISVTVADSQSNTKT 138
17 -12.300PF02221.15; Q29LN3_DROPS/17-146; ML domain  ali follow..  14  1..............GLEFSDCGSKTGKFTRVVVEG-CDTTKSECILRRNTTVSFSIDINLAEEATAVKTVVHGNACVNSGLKCPLEKGESYRYTATLPVLKTYPKVAVLVKWELQDQNSDD.. 120
18 -12.200PF08329.10; Q5E4F3_VIBF1/23-163; Chitinase A, N-terminal domain  ali follow..  14  26.......................................TSYKSLVTVKDFAEVPVTWDRWSGESAEKWRVLLNGVVVHEESVSPAASQKASTTLQ-----VRQGGQYEMTVQLCNGSGATE. 103
19 -11.900PF16024.5; D3HIT8_LEGLN/20-392; Domain of unknown function (DUF4785 topsan)  ali follow..  16  158................................SLIYLQIEPAALQYQYGDQFNATITLKDNEPIDDINATLIGPNNQAISLKLKEIKRNQYEASAHLLSDINTRGDNWYIEVDVTSELEDNSP 251
20 -11.600PF10633.9; Q67M97_SYMTH/263-339; NPCBM-associated, NEW3 domain of alpha-galactosidase  ali follow..  11  1.............................................AVAGRKNGVTLEVKNTGTTEITGINFAST-TFSPDSIDALAPGESRQVTVEVTPNSKALAGDYLVTLRARS....... 77
21 -11.400PF14054.6; C6W230_DYAFD/3-296; Domain of unknown function (DUF4249 topsan)  ali follow..  1...........IGAGVLINSCIEPFSPPEVTNPGTYLVVDGFLNVSGDTSTVLLSNTQELVLKEPGAIVSVDAENGESYVFRDMGDG------TYKLPPAVFNQDARYRLRVKRSDGREYESE 111
22 -11.200PF07679.16; Q9GV22_MYTGA/647-736; Immunoglobulin I-set domain  ali follow..  13  1..................................PEFTTQLSPLSLNEGDRLKLTCTVK---GQPEPEVEWFYNGQLMQSDDAIKISAIAGHHTLTIDSCIIDDDGNYV--CKAKNPGGQAS. 83
23 -11.100PF16400.5; F4C1M7_SPHS2/21-122; Domain of unknown function (DUF5008 topsan)  ali follow..  13  1................FALACTKEAEQFSEPYPDDRAKTPSP-ASGLPGIEVNIEAK---LPHKDQLVFRFNGEQAEIKEVT---------DAGISVVVPDYASTGITTISVGDVVVFG.... 101
24 -10.500PF16116.5; R6Y5S7_9BACT/235-498; Domain of unknown function (DUF4832 topsan)  ali follow..  147...................................ELQEMTAPAVLLAGQANPVEISLINRG---PVYLVLIDESGKVYETGDSSCTPLLHTISTDLQIPLGLAKGMYSLGLWIPDGSARLQY 254
25 -10.400PF17957.1; Q7MID9_VIBVY/184-251; Bacterial Ig domain  ali follow..  17  1................................PTVSLTSPTGSETLSDKDSLIVSAQAADSDG-IVTQVEFFIDNQSVFVDT-----------NAPYEYLWNAVAGTHTFKA........... 68
26 -10.300PF16339.5; Q8Y460_LISMO/1-79; Domain of unknown function (DUF4969 topsan)  ali follow..  17  1MKKGLLLVSVLMLFIFLTVACGSSEDNEESGEIS......................................................................................... 35
27 -10.200PF10969.8; G8RYD9_MYCRN/4-157; Protein of unknown function (DUF2771 topsan)  ali follow..  10  7.VVVVLASAATGVLIWRLAQHPP--------PKHPEISAYTDGQLVRVGPYSYCDVVNLNDCENPGTVGELAVDGRH----------------PVQLSVPPEISGAPWLLGRKYEGSDVLEE. 103
28 -9.990PF11060.8; F7YRI3_VIBA7/26-289; Protein of unknown function (DUF2861 topsan)  ali follow..  15  46...........LLLQSLTVDCGKSLDKKPLPEWLKSITINRQEIQSPGRDAFHVDIEVDAEKPLADIRLAQWVDKSLSTDSVLTTTSSDSVTGKTRYNLNSKITMGLYRLDITAKDQQ..... 156
29 -9.650PF16583.5; A9MQ72_SALAR/56-200; Zinc-regulated secreted antivirulence protein C-terminal domain  ali follow..  45...............................PSPDLTLINIDNAVLSPGESATITTLVKDVDGINDVMINVATAHQNGNGLWDI--------------VKKGVGPGEYTQVITYLGNHSETLG 126
30 -9.520PF17142.4; SUSF_BACTN/20-273; Domain of unknown function (DUF5115 topsan)  ali follow..  1....................CNEDFKDWADPQSNPQEESAGQLTTFTAGKDASIVMDAATADSVEIAKLSSTTAEEGSKIAVNSLTLNENHTIPFSMTEDHVFKVALAQLDSVTQEAYKSRAS 104
31 -9.510PF17962.1; Q98K29_RHILO/835-947; Bacterial macroglobulin domain 6  ali follow..  10  2....................................IRPDFADDEVPQGGTAKFSLIAVAPDG-KGAQWTLVKVEEPVTFTKSIANGQIDLGADGDATVSVPVDWGQYRLEVETSDPEGPATS 106
32 -9.420PF00963.18; Q9FDJ9_9FIRM/1493-1632; Cohesin domain  ali follow..  15  1....................................VFVTLDKTKAAVGDIITATINVKDFDSVAGYQASVKYDPAVLQPVYSDGTA.................................... 51
33 -9.400PF09134.10; C5B8S8_EDWI9/1041-1138; Invasin, domain 3  ali follow..  13  1..............................DAAQSTLTAAPATIVANGLAKSLLTLTLKDGNGIDGQTVTFNSTLANTTFGSVTDNHDGTYSAELA-----GTTIGTASVSARVNGQPFVVT. 89
34 -9.350PF07437.11; YFAZ_ECOLI/1-180; YfaZ precursor  ali follow..  11  1MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTETTGLALSDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFR................... 112
35 -9.350PF13927.6; H9IS41_BOMMO/56-136; Immunoglobulin domain  ali follow..  13  2..................................PIVRVEPKNITVIEGSKLLLKCEYESNPS-SLSAVFWFRDGERVNNDTAHYQGGTTDQHSLIIMNARGVDMGNYTCLLT.......... 80
36 -9.340PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  12  1MRKLCAVILSAVVWLVAAGTASAAEHQSTLSAGYLQTHTDMPGSDDLNGINVKYRYEFTDTLGLI.......................................................... 66
37 -9.270PF03627.13; Q9L6E1_ECOLX/1-225; PapG carbohydrate binding domain  ali follow..  11  1MKKWLPAFLFLSLATLSYVACNGFTWTHGLYWSEYFAWLVVPKHVSYNGYNIYLELQSKGGFSLDAEDNDNYYLTKGFAWDEVNSSGRV--GVTLNARLPVDLPKGDYTFPVKFL........ 175
38 -9.240PF17972.1; A0A0L7SYS8_9GAMM/482-607; Bacterial Alpha-2-macroglobulin MG5 domain  ali follow..  11  4...................................ALSLKADERPLLPSDDVTFQANGR-GAPAAGNRLQGQLLKRSLDELDQTLDADGNTTVAVESGWKEVHSPINLILQASLLETGGRPVT 117
39 -9.150PF00801.20; PKD1_MOUSE/1213-1279; PKD domain  ali follow..  15  48.......................................................................................................RAQNFTVTVEAANPAGHLSQ 67
40 -9.130PF13754.6; D4MVQ2_ANAHA/1-94; Domain of unknown function  ali follow..  19  31......................................................................................................DIDGEYVIEVIAEDEAGNQSF 51
41 -9.010PF07705.11; Q8TPY5_METAC/349-453; CARDB  ali follow..  12  1.................................SADLGIQDGLAKAWNKLNNTVSVTVINPENADSFALELYSDGTPVESRQVTGLANGA-TETVDFSWKP-EDIKDYTLKAVV-VPGSIISD 95

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.