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Query: PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IFSFLTAAGLLFAGCHQPDELLPSVSRNGINSVTAQFVKNNSEGAAEFYGEFKGYPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDDNVTVDPAVLYMNLNEDNYITVTDQLKQKKVYKVRGRIVKSKACLLEELSLPSQGLNAIIDQETKEVSLIAAGNIEPCTGTYRLSYHATISPDPATTVIDWNASPKLTVTAYDGVSKTVYTVKKEVPAKVPTGIRSGSQKNLFVSETFKTDYGMSGTTNYTLGILGDHLLICSGESEIVYVNKLTGVKAGTVNMGGINLGGGAITSDEANHIVMCSIAANGASQTIYRLDHVTDTPKEVMTWSNATGGKIGSKISIKGDILast
1 -102.000PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan)  ali  100  1IFSFLTAAGLLFAGCHQPDELLPSVSRNGINSVTAQFVKNNSEGAAEFYGEFKGYPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDDNVTVDPAVLYMNLNEDNYITVTDQLKQKKVYKVRGRIVKSKACLLEELSLPSQGLNAIIDQETKEVSLIAAGNIEPCTGTYRLSYHATISPDPATTVIDWNASPKLTVTAYDGVSKTVYTVKKEVPAKVPTGIRSGSQKNLFVSETFKTDYGMSGTTNYTLGILGDHLLICSGESEIVYVNKLTGVKAGTVNMGGINLGGGAITSDEANHIVMCSIAANGASQTIYRLDHVTDTPKEVMTWSNATGGKIGSKISIKGDI 354
2 -33.700PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  24  7FILSLTFIGISCFACLDDET------------------------------------------------------------------------------------------------------------KYVTQKKTNYPLTAFAVAVSYYHGKIDQTTHKIEIGTIENANVITVDYTLMDGASISPDPATFIQNWQKEQKVTVTTANNQSTTYTIVLPKYDET................................................................................................................................... 130
3 -27.300PF15416.6; R6XU43_9BACT/27-471; Domain of unknown function (DUF4623 topsan)  ali follow..  13  4..................................................................................................................................QVEQPYDTEISAIKIVNTVLEGRIDEENKMIDFKPETDFSNLKVEATLSDGAVLENDVSMDEETTEKTLILRIKNHNRYKDYFIRVRKKVPVFGAD--WEKVKTYGFCAATNNTYEHFNSGTTRWAGFDGEYVLVVSRKGGTNVSDLKEGKIEPNNEGVTGGTYPIHSGAVIKGHTYVSNLSGGGKWLMIYYYETPASAPEVILNVTLDANSRHGDNASFNLDE 251
4 -12.900PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  7TMALLAVPATVAVSCKDDGMDVKFTDKG-----EMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAKLLFDGTSVSDLTIRTKTYGTYDAAIFVPLLKDIPDGTAEIT----FTAQNTGLGITE..................................................................................................................................................................................................................................... 123
5 -7.810PF11182.8; C1DP86_AZOVD/18-196; Alginate O-acetyl transferase AlgF  ali follow..  12  1...LLLGFGGTTVQAAGDAALYEAVAPKGSTFVRL--------------------YNASNQEVSANV-------GSINLEDVSPLSSSGFEYLPAGARVGSQNLPVNLSAEHYYTLVTQSGAAPLLVEEPAFKSKQKALLRVQNLSDKPLTLKTADGKTEVV-PKGRGDREINPKANLALFDGERKVADLKPISLARGEVVC........................................................................................................................................................ 179
6 -7.110PF09476.10; Q98BF6_RHILO/37-236; Pilus biogenesis CpaD protein (pilus_cpaD)  ali follow..  12  1....AVAMTALLVGCAQRDSITVGAIPDDYRTIDLPVGAGDRGMTGSQRDTLLGFLDGAAPTLTIQIPSGSANEVAATAAGRDFARLAVASGVKRNRIVVVSYQAGSSETSAPVRVS............................................................................................................................................................................................................................................. 129
7 -6.910PF16397.5; Q8A796_BACTN/2-264; Domain of unknown function (DUF5006 topsan)  ali follow..  6KILPVCLLTIGLTGCEDETKYRPLPEAVPL-TMSINEKAFVMGEHLKVDIKVEPDADGNEVVANEDFDIYFTAKAGTEDVANVFEPFSSIVTFPKGIQVDFPVKTSGLVGTTTMEFVAFARGYKMANSSQGIKVSDY-YRISMSLENNTENVVTEGGKFVLVAKEEGRYDNLPSTLTIPAGRTSVKSAAVTIKQ-DLQLVLNLKSNSSSN................................................................................................................................................ 239
8 -6.900PF12988.7; Q8A4K6_BACTN/14-147; Domain of unknown function, B. Theta Gene description (DUF3872 topsan)  ali follow..  11  4ILCCMAAALFCFTFCSDDLDIQQEYP-----TVEAMPVADKIAGGQTVEIRLEITEEGNFSGTLYTLRYFQPDGN-KLEDGTVLKPNDRYLLSEKKFRLYYTSRSTNEAQTIDLYFENNWQDVRQLSFSFNNR............................................................................................................................................................................................................................. 134
9 -6.880PF14054.6; C6W230_DYAFD/3-296; Domain of unknown function (DUF4249 topsan)  ali follow..  16  1.....IGAGVLINSCIEPFSPPEVTNPGTYLVV-------------------DGFLNVSGDTSTV--------------------LLSNTQPVNSEELVLKEPGA-------IVSVDAENGESYVFRDMGD----------TYKLPPAVFNQ---DARYRLRVKRSDGREYESEYVEVSKTPPID-SITHRVDPRKNAMMIYVNAHDATNATRF............................................................................................................................................ 150
10 -6.610PF05215.13; Q60193_9MOLU/2-236; Spiralin  ali follow..  11  3.LLSILAVFGVVIACNKTESNNLSRVTTIAAPETVDAIDAA---------------KVTKEEIKNGLNPNVLKAVQGVVKTAQATDFVYEVYADNQGKALDTVNLKAGNVDVYVQITPAKDKTGKSGYIKVTLPKAKADISDVTVPEKTVGIKVGNNKDADLAQAVLNAIKAKVSDVEASEFAITNNGEVGDYSAPKTVEVTVKANDGQFKFNAKVTATTA..................................................................................................................................... 235

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.