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current user: public |
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Query: PF16541.5; L2GD02_COLGN/38-169; Alternaria alternata allergen 1, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 | |||||||
# | Score | Template | Links and tools | %id | First | LTDFDFHASYIFTTPAHQNSWGYVSFNVSNPVLDYTVSCSAASSRLNDFFYGEMVYDCKAPDGESATTSFTFSRPDGALALNQSWTCNDDPKYPARYTAKGGAVADLSCEETSWQNLNWTIGQVYSRREIKC | Last |
1 | -66.400 | PF16541.5; L2GD02_COLGN/38-169; Alternaria alternata allergen 1 | ali | 100 | 1 | LTDFDFHASYIFTTPAHQNSWGYVSFNVSNPVLDYTVSCSAASSRLNDFFYGEMVYDCKAPDGESATTSFTFSRPDGALALNQSWTCNDDPKYPARYTAKGGAVADLSCEETSWQNLNWTIGQVYSRREIKC | 132 |
2 | -8.140 | PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament) | ali follow.. | 21 | 96 | ...............................................................................AADGVWSCTIDGSAATGWKDK----IPTGCT...................... | 123 |
3 | -7.700 | PF14155.6; F5YUG4_MYCSD/19-129; Domain of unknown function (DUF4307 topsan) | ali follow.. | 8 | 43 | .................DDQTVTVKISVTRSDPSRPAVCIVRVRAGDGSETGRREVLIPPSESSTVQVTTIVKSSQPPLM--DIYGC............................................. | 111 |
4 | -7.290 | PF16758.5; UL141_HCMVM/51-241; Herpes-like virus membrane glycoprotein UL141 | ali follow.. | 17 | 78 | ......................SLTFNVSTDTAG--------------------MYECVLRNYSHGLIMQRFVILTQLETLDQIWSCGMYRGFQRNYRADAEDCWKPACPDEE-PDRCWTVIQRY....... | 191 |
5 | -7.180 | PF13015.6; B6K4H4_SCHJY/349-504; Glucosidase II beta subunit-like protein | ali follow.. | 10 | 52 | ......................EYRIRFYETVFQDDISLGEFVEQEGNILKYANGQKCWNGPPRSAQVKVECGKSNEIISVLEAQKCE-------------QMLSPAACSTTLYRKSLITEANEHPTPETI. | 150 |
6 | -7.170 | PF09590.10; Q66956_9RETR/5-596; Lentivirus surface glycoprotein | ali follow.. | 13 | 443 | ...............NKSKSHGEARFRIRNEGTNTSLTCGSTANPVDCTMKANTMYNCSLQNGFTMKIEFNMTKAVEMYNIAGNWSCNSD-------IPPGWGYMNCNCTNSTSSSFP-------TCPKMAC | 560 |
7 | -7.070 | PF03498.14; Q6EZE1_ECOLX/49-197; Cytolethal distending toxin A/C domain | ali follow.. | 11 | 50 | ........................TVKFVNVAQG---TCMEAFKN------GVIHNTCDDNSL------------------SQEFQLLPSTNGNVLIRSSALQ----TCIRADYLSRTILSPFAFTITLEKC | 126 |
8 | -6.770 | PF04092.13; F0JB87_NEOCL/229-366; SRS domain | ali follow.. | 11 | 8 | ...............GKDSNPEPLKVEMTTDKNTLTIQCGSEGSLNPETYATQY---CDPEGEVGSCTLKKFED-----TFATSWWSKADDSRSATLT-ESEKQFLVGCIPKGSSANSLDAAQAAATTTSNC | 132 |
9 | -6.710 | PF15299.6; F6Q6D7_XENTR/180-406; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 | ali follow.. | 10 | 10 | ....................................................................................WKSQYVPYDGIPFVNAGSRAIVMECKGAQPKKSAENDNMSGGLYKATC | 63 |
10 | -6.680 | PF15882.5; W5MIN6_LEPOC/50-341; Domain of unknown function (DUF4735 topsan) | ali follow.. | 9 | 107 | ..........................LLLGTWKDNGTPCIVTK-------------SCRETMTRFGCPRYSLSHQLLYFMMGRMQGCSNILQGEHRQARANLTIRDYECSNMMKSNVEFEKDDIFIENIMLC | 209 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |