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current user: public |
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| Query: PF16632.5; I3J5L6_ORENI/1242-1306; C-terminal region of Caskin, from PfamA32U |
| . 10 . 20 . 30 . 40 . 50 . 60 . | |||||||
| # | Score | Template | Links and tools | %id | First | QHRLEETSASLAAALEAVEHQIKEEDTQNDPTSSSLSGKKATVSILDDIGSMFDDLADQLDAMLD | Last |
| 1 | -40.100 | PF16632.5; I3J5L6_ORENI/1242-1306; C-terminal region of Caskin | ali | 100 | 1 | QHRLEETSASLAAALEAVEHQIKEEDTQNDPTSSSLSGKKATVSILDDIGSMFDDLADQLDAMLD | 65 |
| 2 | -5.870 | PF02405.16; K9WIJ8_9CYAN/42-253; Permease MlaE | ali follow.. | 25 | 66 | .....................................AGQVGSAYAAEIGAM--QISEQIDAL.. | 89 |
| 3 | -5.440 | PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain | ali follow.. | 12 | 24 | SKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLD | 88 |
| 4 | -5.150 | PF16174.5; U3KN98_RABIT/5-152; Intracellular hyaluronan-binding protein 4 N-terminal | ali follow.. | 19 | 9 | ............................................VTNRFDQLFDDESDPFEVLKA | 29 |
| 5 | -4.810 | PF17084.5; TDA11_VANPO/1-465; Topoisomerase I damage affected protein 11 | ali follow.. | 17 | 2 | ........................................DSDNVDESVGML--DLKTKFDVFIE | 24 |
| 6 | -4.770 | PF01420.19; O25519_HELPY/109-276; Type I restriction modification DNA specificity domain | ali follow.. | 24 | 139 | ....................................EIQQEIVKILDQFSALTTDLLAGIPAEIK | 167 |
| 7 | -4.710 | PF05639.11; R4LNJ3_9ACTN/4-71; Pup-like protein | ali follow.. | 36 | 34 | ..............................................AEITEDVDDLLDEIDSVLE | 52 |
| 8 | -4.590 | PF01066.21; W0J655_9BACT/3-70; CDP-alcohol phosphatidyltransferase | ali follow.. | 33 | 54 | ...........................................KIVSNFGKFMDALTD....... | 68 |
| 9 | -4.570 | PF08378.11; Q9KTS7_VIBCH/18-145; Nuclease-related domain | ali follow.. | 20 | 25 | ............................................IYNDLRIEHKGEIAQIDHLV. | 44 |
| 10 | -4.560 | PF07407.11; NS2_BAVJK/1-420; Seadornavirus VP6 protein | ali follow.. | 23 | 23 | NQELEGVSFDELVALREENAKLKQENEALKAKLHRLESDWTTSDIVEKVELMFDRIGKIMDKMRE | 90 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9. |