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Query: PF16750.5; Q4KDB2_PSEF5/38-148; Sensor domain of 2-component histidine kinase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst FLDPADRQYLASYAQQAEHAWRQGGVAAVDEFQRQLATREDTWVAVIGDRLQSLGSTPLTAEEASHLTFMRKLDWPMSRRLQDELPYVSIEFPEHPEQGRLVLQLPERLLPLast
1 -66.600PF16750.5; Q4KDB2_PSEF5/38-148; Sensor domain of 2-component histidine kinase  ali  100  1FLDPADRQYLASYAQQAEHAWRQGGVAAVDEFQRQLATREDTWVAVIGDRLQSLGSTPLTAEEASHLTFMRKLDWPMSRRLQDELPYVSIEFPEHPEQGRLVLQLPERLLP 111
2 -7.470PF17157.4; C5BC21_EDWI9/33-130; Gammaproteobacterial periplasmic sensor domain  ali follow..  3  1QTHQRAEIQLNILTAMIDQQLLTESRDSVKRWLPVMMRSAGAVELSVYHDGSQV......................................................... 54
3 -6.990PF09984.9; B7VK74_VIBTL/31-175; Uncharacterised signal transduction histidine kinase domain (DUF2222 topsan)  ali follow..  10  11.VVNTGTSIIEPLAIASESGMKLESRESVRQLISYAHRKNSRSIAVFDERHELFVTS...................................................... 69
4 -6.770PF16736.5; Q65G91_BACLD/33-148; Single Cache-like  ali follow..  8  2SYDAKLSSHIEKEAALVASLANGENMKSQGAILEKASRELDSRVSLIDTKGQVLFHFG-IKEALESDLNGEGGGFRINPDDESVY-RYVQPLKDDGNVNGYIISTP..... 116
5 -6.340PF08301.13; Q1KL34_9HEPC/2073-2173; Hepatitis C virus non-structural 5a domain 1b  ali follow..  12  17.........................RVSAEDYVEVRRLGDYHYVVGVTAEGLKCPCQVPAPEFFTEVDGVR-----IHRYAPPCKPLLRVTFSVGLSNYAIGSQLPCEPEP 99
6 -6.300PF18698.1; A0A0D6Z9D0_9BACI/38-166; Histidine kinase sensor domain  ali follow..  9  3...NETRKDMIHTAEKIARVLKENEEALALEIAWELIDDNEKVTVIKDQNTFYTTDKDLSLVFERDKTVDMITSLP-NEAGSTQYLMIGVPLHQQEKENGAVF........ 123
7 -5.920PF17511.2; Q9L3P3_9BACT/1-136; Mobilization protein B  ali follow..  14  24...AQSMATLADEARQVMSQTQQASEAQAAEWLKAQRQTGAAWVELAKELREVAA--EVSSAAQSARSAARGWTWKLGVLIASVTPILALLIAS................. 114
8 -5.890PF10922.8; GP12_BPT7/1-85; Protein of unknown function (DUF2745 topsan)  ali follow..  8  1.MGRLYSGNLAAFKAATNKLFQLDLAVIYDDWYDAYTRKDCIRLRIEDRSGNLIDTSTFY-HHDEDVLFNMCTDW.................................... 73
9 -5.450PF17152.4; F9ZZV9_METMM/42-151; Periplasmic sensor domain  ali follow..  9  5.LLVNAKSTANMIGFNASAALVFEDGPSATDVLKALRNSPNV-AQLYTVRGEPIAR....................................................... 60
10 -5.410PF16261.5; K9PI70_9CYAN/44-358; Domain of unknown function (DUF4915 topsan)  ali follow..  15  208WLLNSGTGEFGYIESGKFVPLTF-----CPGFGRGLAFWGKY-AVVGLSKLRSRPFSGLALETRLANEGKFPQCGLMIIDITNGEIVHWLQLSGVVEELFDVVVLPGVRQP 312
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.