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Query: PF16858.5; E9GRW6_DAPPU/321-617; Condensin II complex subunit CAP-H2 or CNDH2, C-term, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PWGGMDPYSENDALKKPCGAPVRCKMPVALRKRKGVGKVPNNEEISVEIDEFLGKSQIIKKPALKYSQPDTEFWEDYVHFSKTTGTVIKKQQKLRPEKNIAEGIEEMDQQDINNEDDDHLHKDAPEFGNSFDNSGGLDVSYDSFHPELVGDPVEKANPTKEMDESKQFFELVQQFMAEYTASAKEFVTSTESTRRVQAWHDMIQPRLREAEMRRDFDIHLYGSRIIEEFGAAAPIGSQCAFTKIVHDQPKNEVARYFLATLQLANAYNVEIQLQDALTLDGVELKLLSRERHHEHMDLast
1 -90.600PF16858.5; E9GRW6_DAPPU/321-617; Condensin II complex subunit CAP-H2 or CNDH2, C-term  ali  100  1PWGGMDPYSENDALKKPCGAPVRCKMPVALRKRKGVGKVPNNEEISVEIDEFLGKSQIIKKPALKYSQPDTEFWEDYVHFSKTTGTVIKKQQKLRPEKNIAEGIEEMDQQDINNEDDDHLHKDAPEFGNSFDNSGGLDVSYDSFHPELVGDPVEKANPTKEMDESKQFFELVQQFMAEYTASAKEFVTSTESTRRVQAWHDMIQPRLREAEMRRDFDIHLYGSRIIEEFGAAAPIGSQCAFTKIVHDQPKNEVARYFLATLQLANAYNVEIQLQDALTLDGVELKLLSRERHHEHMD 297
2 -9.610PF05786.14; G3J5P2_CORMM/14-857; Condensin complex subunit 2  ali follow..  14  718.............................................................................................................................................................................RRVRPEYVQYARVAKKVDI-RRLKDW-KGMGLEALQTPPAMA-SLSEQQPQPPQQPPEDAATNPTLKFTKVMNNPVMNDIS-CFISLLHLANERGLIINTTE--DLKELEIR............ 843
3 -8.170PF02616.14; P74212_SYNY3/16-259; Segregation and condensation protein ScpA  ali follow..  14  111......................................................................................................................................................................TLAELIDQIEAIAVEIEKSEQKPKRVKRARPQSRREALQIITELAHQENLTASQLEQFLLPEILPDLPHRSWVDLDTLLHLPDKKDKVGVFWALLLLSSQSKVSLAQEE----QDLQVQII.......... 244
4 -7.300PF08613.11; Q389J6_TRYB2/370-620; Cyclin  ali follow..  12  146................................................................................................................................................................................................................GSDCSKLQLLIVSVGLTVSFGESAPLV-TLIYLFRIVKRCDAANWYRLTAVALLVANECFSNATDIPLKELNKLEIDFLF......... 245
5 -6.440PF11237.8; B0JR13_MICAN/37-204; Protein of unknown function (DUF3038 topsan)  ali follow..  13  12......................................................................................................................................................................ALESLEVGAGEALLALCKELGLDKIVKNRIIFWRLRCTNPWRISYTLDRLTLDQA-RQLLLARQQMESKGLPVDNNFLLS-----EYLERFRSNFR-PRRAKVSVYLADENALNELALSLLDQ........ 149
6 -6.330PF04824.16; Q6YTK0_ORYSJ/670-723; Conserved region of Rad21 / Rec8 like protein  ali follow..  16  1..........................................................................................................................................................................................................................................QPGKFILNRILEGRHRKQAARMFFETLVLKSYDYIDVEQEAA---GDIAVS............ 49
7 -6.230PF02691.15; VACA3_HELPX/43-1023; Vacuolating cyotoxin  ali follow..  13  800....................................................................................................................................TTIAVNLGNNSTPTNSTTDTTNLPTNTTNNARFASYALIKNAPFAHSATPNLVAINQHDFGESVFELANRSS--AQGRDLLQTLLIDSYARTMIDATSANEITQQLNAATTTLNNIASLEHKTSGLQTLSLSNA--VNLSRKHTNHIDSFAKRLQALKDQR.... 979
8 -6.070PF05704.12; Q4JZR5_STREE/46-317; Capsular polysaccharide synthesis protein  ali follow..  9  13....................................................................................................................................................................RRKYKQTIKNLDREKQYSLSYNQRHKDASNKI--WFQGLDPHVVQKKHLADREVVVLTDENYHQYVTFPDYIKEKATQGFISKAHFADLLRLEL----LTEYGGTWIDGT....................... 127
9 -6.060PF07753.11; Y5G8_ENCCU/386-611; Protein of unknown function (DUF1609 topsan)  ali follow..  10  5.................................................................................................................................................................SEEAEMPSVEVGGARRKTGKKSEGGRKRYKIHRRVSRWRKSPEKIKEEWDKGSE---EKWRGRSLEEIKEQKVFHDIMGVLELLRSE---DADKFFIDTGDYTKGGSGVLESGGKRMAGVVEVGTFKDSSSGCPV. 141
10 -5.800PF15968.5; REXB_LAMBD/6-144; Membrane-anchored ion channel, Abi component  ali follow..  13  15.........................................................................................................................................................................SICYLLFRHYIPGVSFSAHRDGLGATLSSYAGTMIAILIAARTRRLAKIREYGTSVVIVY--------ALSFVEL---------ALFFCGLLLLSSISGIGIASASFIHICILVFQLYNLTREQE... 139
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;