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Query: PF16949.5; B4D3C0_9BACT/40-578; Putative ATP-binding cassette, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SPAMIAILGGFIIGYLALGYWMFFEGLNFLYRFPLVGSLLSQRLIYLVFGFFFIMLVFSNLIIGYSTLFKSRETTWLLSLPLPPPNIYRWKFLEALAVSSWALLFLSAPLMFAYGRVHEASPIFFLEMAVVFVPFVIIPALVGSWAVIFLVRLLGHRDVKNIVLVISLGVLALLIAGIKPVTDAEALSQEDVLSFDQLLRHTRISVNPFLPSAWLAQTVLAWSEGLTRQGLFSFLLLLSYAMMGLLVGYEVIGRFFFGSWTMALSSRAARFQRQAVARRQRERRPELLEYITNFLRPWSPPTAALVLKDARLFWRDPAQWIQFMIFFGLLCIYVVNLRNVAFNFQNPFWETMISYLNLAACSLTLSTLTTRFVFPQFSLEGRLLWLVGLAPIGLRKVLLQKFWTSVFTTTAITVSLMITSSLMLHLPWLRVGFFAVAIALMSATLSGLSVGLGALFPNFKEDNPSKIVSGFGGTLCLVASFLYITLFVSLSALPDIARVSKFPWEVPTALPYALALLLSFSVMLFPLLLAIRRVKNLEILast
1 -146.000PF16949.5; B4D3C0_9BACT/40-578; Putative ATP-binding cassette  ali  100  1SPAMIAILGGFIIGYLALGYWMFFEGLNFLYRFPLVGSLLSQRLIYLVFGFFFIMLVFSNLIIGYSTLFKSRETTWLLSLPLPPPNIYRWKFLEALAVSSWALLFLSAPLMFAYGRVHEASPIFFLEMAVVFVPFVIIPALVGSWAVIFLVRLLGHRDVKNIVLVISLGVLALLIAGIKPVTDAEALSQEDVLSFDQLLRHTRISVNPFLPSAWLAQTVLAWSEGLTRQGLFSFLLLLSYAMMGLLVGYEVIGRFFFGSWTMALSSRAARFQRQAVARRQRERRPELLEYITNFLRPWSPPTAALVLKDARLFWRDPAQWIQFMIFFGLLCIYVVNLRNVAFNFQNPFWETMISYLNLAACSLTLSTLTTRFVFPQFSLEGRLLWLVGLAPIGLRKVLLQKFWTSVFTTTAITVSLMITSSLMLHLPWLRVGFFAVAIALMSATLSGLSVGLGALFPNFKEDNPSKIVSGFGGTLCLVASFLYITLFVSLSALPDIARVSKFPWEVPTALPYALALLLSFSVMLFPLLLAIRRVKNLEI 539
2 -25.900PF16962.5; R6NXV6_9FIRM/1-519; Putative ABC exporter  ali follow..  9  26...........GMAVIFTVLIYGILIGTIFTSSVPYDKETMYLQAATAILAGIGVTAFFSMLSLMSALLYDTDAFYFFSGPYTKTQTNLFILVQTLKGALGYGLIGCF-FMGLLSMGGYFSIPYFLLCLLVLFLISSIFLLMTDYIYMWTLVKPKAKIWNYIAVILVLASAGAVFFISMQAAGYDLED--------GFLKFAVSREFYYVP--WGKLVLSAFLGKEYMGMIIGLALLLLANAVFVILFLTFPRNIVEQAVRDAEEISNYVRRVKANGGNILSSEGKIKQVRGEF----PEGARAIFYKNILSMKKTGSFLRKQDFFVIVVYFLISYFMIAERRF-------------YMFSYMMILWLFNLLNDTEFLGDLKNYQIY-LIPENPLKKLIYVVLPAYFKISILIGTAILIAGIFNRMPVLTTLQYFFMLLGYAMIFISGTVWAAKVMKTKASVALENLLR----------MLIILLAAIPATGAGFLAWFLLKDLYVFQAVVTVVTIVMNFLVSAIILIACQGMMNGRE. 519
3 -13.900PF12679.7; E4NSW3_HALBP/4-306; ABC-2 family transporter protein  ali follow..  9  1..............................................................................................................................................................................................................................................................................................................QAVARKEFDDSIRSRWLHGATVFFVLFVGGAALLAFGLIYPDRFKDASNLFG---PGLLALILGFIALSTSYGSITEERETMKLSLSLPNSRRDLIVGKLLGRGAVVIVALLAGFLAAFVAMGISYGSFVPMIALTVLLAFAFVSIGLGISAVA-----DTNREATLATLGLYLIFGILTYETLSAQVYYGAARGRLLGATTGETLVIEPVLMMAILLAWIVVPVVVGYYVFQKQDL 303
4 -13.800PF13346.6; D4LWN6_9FIRM/3-214; ABC-2 family transporter protein  ali follow..  11  1...............................................................................................................................................................................................................................................................................................................GLLKNNFYGVIENLKIALAFVMLVGVLLLIT---------------------TLLSAFSLIAPPIIALLMVSCVRKESASKWYKLTLPVRRKAIIESQYISHTIWSISGVVIVAVFMTLFIHGDQYFYYGFRDAITLVLGGGILAILIGAFSYP---------LYYLWGTEVILIISVIGSIGIVFALTMLVNTFSDGNVSDTLYYISLLVVTAITIITFIFSCVLTKQIFQ.... 212
5 -12.800PF03379.13; CCMB_RHOCB/1-215; CcmB protein  ali follow..  20  1.............................................................................................................................................................................................................................................................................................................MRALLSRDLRLAIRAGGGFGLGLAFFLIVVTLVPFGVGPQGEILARIASGIL-------LGALLACLLSLDRIFALDFEDGSLDLLATAPIPMEAVVTIKALAHWITTGLPLVLAAPLFAVLLHLPAPAYLWLEVSLLLGTPALSVLGTFGAALTVGLKRGG-----------LLLPLLALPLYVPTLIFGAELVRRGAEGLAIEVPLAMLAGITAATVALVPFASAAAIR....... 214
6 -12.100PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs  ali follow..  14  16...................................LGSFLCWVAFISSGLGLSLIFTLSLVFSQIYPAQNIAISEPLRYLPVR----FSERMLVVFFIDSINILAFATPTIAVLMVK-------NLYFGLYSLLWIIAAILLGYSMVFLYYALFGVKVRSGFSVLAGILFFAVLVFALRRFQEIPDLTPYLTPHLLLLSYAASSATIKLTGRVW-----------------------------------------------------------------RSILNPEIVEVKGSSRLSSGSPLRAMLIKDFRLILRKNA------LFPLIVPLVIVMPNVVSIANMPNL-----------SIFIITTISTLSTIDLRIIGNLENVDFLRMLPLSKRGFVMSKACLIFVISFAASLPAGSIAFIVSQNPFYLFMAFAIPAIVIGLLLVNFGAVYAVLSPRFILSQPADIISSVLTLLAMTALF.......................................................... 404
7 -10.600PF12730.7; R6N7Z5_9FIRM/4-186; ABC-2 family transporter protein  ali follow..  13  1................................................................................................................................................................................................................................................................................................................LLWAEFQKLRR-----SNIILFTVFAIVFTAVFVFLAGTTTASPEQMTVWYMTMTQVWLVLPAVIALLGSYMICREDDTIKNLSLIPVNERKLTAAKMIILFLFSILFLLTFSIEMVLHSELSIKIFFDFLKMYLLEGIGV--------AVSPII-------VPLKKNYWLALAVAEIY........................................................ 165
8 -9.150PF01061.24; AB34G_ARATH/524-737; ABC-2 type transporter  ali follow..  11  3.............................................................................................................................................................................................................................................................................................................FKACFDREWLLMKRNSFVYVFKTVQITIMSL-IAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEV-------IANSGGTLALLVVFVLGGFIISKDDIPSWLTW---------------------CYYTSPMMYGQTALVINEF 214
9 -7.990PF04147.12; S3ECN4_GLAL2/48-905; Nop14-like family  ali follow..  7  474QRIRALYHPKLNSDNKSKLCNFAISLIDHISYLANQSKLPPFSVLETLIRHIHSLAKSYPILTAIGTVFPTSDHFHQVVTPA---LLTMGRYLALKIPQNLFDYAYMCTLCLQYQILSKR---YIPEVISFIENSLCTLAPSRMLILPGNFPYHEPKTSVRIAEVLKSGRQLRFSDCVAQERSKAEGESLKVALLDTNLSLLGVASETW-PSLKILKHLGNKTCRPLLPSNTQKSLTSLTKKITTALSNSVLNQ------RPLELHHHRPLAIKTSIPKFEETFNPDKHYDADRDRAEAAKLRKEYKQEKKGAMRELRKDAAVV....................................................................................................................................................................................................................... 826
10 -7.070PF06182.11; P74757_SYNY3/4-229; ABC-2 family transporter protein  ali follow..  9  1............VVNLGGSLFSLFLFYRTGYSFAGWNWQSALVVLGMFTILQLAATLFIPNLNRIVRYVEQGTLDFVLLKPISSQFWLSLRQLSP---WGVPDICFGLGLIVYAGVSLNLKAWDLVLGTILLGLGCIVLYSIWFMLGATSIWFVKIYNVTEVLKGFLEAGRYPMVA---------------------YPAIYRIFFTFIIPIAFLTTVPAEAMLGRLDPIWLLATAGLA------IALLTLSHYFWQFALRFYTSAS................................................................................................................................................................................................................................................................................ 226
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.