current user: public

If you have questions about the server, please let us know.

Query: PF17030.5; I3EIZ1_NEMP3/1-217; Putative beta-lactamase-like family, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .
# Score Template Links and tools%idFirst MKVKRLSIAHNGTTQDGYLMESHETSLLFDPPSKVLDSDVELCGISDRGYIEIEVIKEYPPDITGIFITNSNSLSVFFVESDVTIYLTDYIYLQMKERLKYYVSLGPITRKKHQPQPHTKIVSISEYKEISRRVKIIRHNQVINFTYLSITAQAAGLSLGWIMYAVAQDKEKICAYAYGIPGGSSLAHEMKPSKTPVSLIVNQFLDNKPKNIQDLSKLast
1 -102.000PF17030.5; I3EIZ1_NEMP3/1-217; Putative beta-lactamase-like family  ali  100  1MKVKRLSIAHNGTTQDGYLMESHETSLLFDPPSKVLDSDVELCGISDRGYIEIEVIKEYPPDITGIFITNSNSLSVFFVESDVTIYLTDYIYLQMKERLKYYVSLGPITRKKHQPQPHTKIVSISEYKEISRRVKIIRHNQVINFTYLSITAQAAGLSLGWIMYAVAQDKEKICAYAYGIPGGSSLAHEMKPSKTPVSLIVNQFLDNKPKNIQDLSK 217
2 -57.300PF16661.5; G0VCW5_NAUCC/19-212; Metallo-beta-lactamase superfamily domain  ali follow..  12  1..................ILKFDNVTILIDPGWTSTEVS---------YVDCVKYWSNLIPEIDVILISQPTIECLGAYTLRIAVYATLPVANLGRVSTIEWYASQGI----IGPFLDSNKMEVEDIEAAFDHIQILKYSQMIDLDGLTFFALNSGVNPGGSIWCISTYSEK-LVYAPRWNHTRDTILNAASLLKPLSTLMRPSG............ 192
3 -20.400PF00753.27; PDLA_RHILO/30-244; Metallo-beta-lactamase superfamily  ali follow..  8................SILIEHAEGRFLIDTGYDYDHVMKVLPEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGNKYHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTFEGIDGDVDLARGVKLISTPGHSIGHYSLLVEFPRRKPILFTIDAAYTQKSL.............................. 186
4 -13.100PF02112.15; Q5AGE4_CANAL/35-421; cAMP phosphodiesterases class-II  ali follow..  43.............PDCETVSYYYHPNVTITTPFSNFQPGRPI-----------LHTQNIFNNLQNYLISHSHLDHVCSVVSNKILYGSHYTINAMQQHLFNGKVWPNMPSFKI-------------------NLNYLESNRSERIGIYTVKMFDLSH---GEFNKLTEDKEDAQHHSNSNSNSNNIWGKRYDRRRSSITTIPQNTSGLIIKNSEALN 224
5 -11.000PF13483.6; B9JRY8_AGRVS/77-244; Beta-lactamase superfamily domain  ali follow..  1.TITFLG-------HSTFEIETPQGLTIDT---------------------DYSGYLRSARTPDVVTMNKAHSSHYTLSPDPG---------------------------------------IAQVLHGWNDAQPGEPVHHNLVVGDAYIRNVATDIR-GNSIFIFEVAGLC-IGHLGHLHHELTDK-QFAAIGRLDVVMV................ 139
6 -9.820PF12706.7; I3ZD26_TERRK/61-263; Beta-lactamase superfamily domain  ali follow..  11  1........................RNLLVD-----------FERLVLLRRQRPGILIDHLPPVDAVLLTHAHMDHLNLPSLRK--RHATKLTVIVPKGVADLVE-----------------------NLGFRSVTELEWWQTTALEPVSITMTPARHWGAFGGYVIAGAGHS-VYHSGDTAY................................... 134
7 -9.540PF14597.6; K9Q9I8_9NOSO/1-199; Metallo-beta-lactamase superfamily  ali follow..  15  22.............DFNGIAWIRPDGNILIDPVALSNHDWNHLESL---------------GGVDWIILTNSEHIR---------------------------------AAKEIAVQTYAKVAGPAAEKECFPIACDRWLSDGDEFVGLTTIELQGSKTPGELALLL----EETTLITGDL..................................... 137
8 -7.380PF00448.22; FTSY_ECOLI/293-494; SRP54-type protein, GTPase domain  ali follow..  10  12......VGKTTTIGKLARQFEQQGKSVMLAAGDTF--RAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLD-GTAKGGVIFSVADQFGIPIRYIG....................................... 180
9 -6.870PF02571.14; K9PRS2_9CYAN/2-241; Precorrin-6x reductase CbiJ/CobK  ali follow..  1.RVLILGGTGDAAELAARVAAIEGVEAITSLAGRTREPSIPLGDFRIGGFGGVAGLANYLRQIDLLIATHP--------------FATQISCNAVDAASEVGVPRLMLIRRPWQKVSGDRWIEVDTVEAAAKALPLQAQRVFLTVGRQELGTFAN-RIIDLPTPDAVMPPGLILCDRGPFALHHEREI---IHHKIDTIVSKNSGGDATYAKIIVAR 210
10 -6.670PF10996.8; R6IAG7_9FIRM/251-380; Beta-Casp domain  ali follow..  1..............................................................TQEMLYFIREIKNRGLVTGDFPVYVDSPLAIEATSVFLQCDSSYIDEEMQAVIRSGKNPLCFPGLRLSVSQEESKAINED---KTPKVIISASGMCDAGRIRHH--RPECLVLFVG....................................... 119

FFAS is supported by the NIH grant R01-GM087218-01
1 4 1 5 6 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.