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Query: PF17216.3; RRP44_YEAST/252-399; Rrp44-like cold shock domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSLast
1 -71.600PF17216.3; RRP44_YEAST/252-399; Rrp44-like cold shock domain  ali  100  1DFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRS 148
2 -11.700PF08206.11; Q898Q8_CLOTE/70-128; Ribonuclease B OB domain  ali follow..  27  1........................GKIQGHQRGY--AFLIPEDDIQDVFI-PASGLNGAMNGDKVVVKTFKEVR.......................................................................... 47
3 -7.500PF12421.8; Q8ZQF6_SALTY/965-1106; Fibronectin type III protein  ali follow..  18  3.................PDGRLISGHINAISGALNNVVI-----AEDCTIQGTLRAER-ILGDIVKAVGKE............................................................................. 56
4 -6.260PF02762.14; A0A068Y1R3_ECHMU/263-344; CBL proto-oncogene N-terminus, SH2-like domain  ali follow..  14  4...YMAFMTYDEVKAVLKKFRSHPGVYRLSCTKLGQGYITDNLRILQTIIQNKSLAQALLDGERDGFYLYPNGT.......................................................................... 81
5 -6.120PF03069.15; F7VVF1_SORMK/11-391; Acetamidase/Formamidase family  ali follow..  13  12PQLHNRWHPDIPFAGTIADGE----TVKIECIDWTGGQIGNNDSADDMKLSGPFEIEGAQPGDLLLVEIMDVQ........................................................................... 89
6 -6.080PF03100.15; E1SMF5_FERBD/4-136; CcmE  ali follow..  9  34......FFTATEVVQGRQDGMVVEGSVERDPNSLKIAFQVADTGPAGIVAQGTLVDSTTLEASEVLAK................................................................................ 125
7 -5.930PF02145.15; F4Q8J1_CAVFA/171-354; Rap/ran-GAP  ali follow..  14  11...FEEFLDFIGERVQLNGWPNFRAGLDVRTGTTGTHSIYQRWNNNEVMYH-QLERKRHIGNDIVVI................................................................................. 86
8 -5.880PF16669.5; E9J0S8_SOLIN/329-443; Tetratricopeptide repeat protein 5 OB fold domain  ali follow..  11  3.....DLIPLRELSLGLNTEKVVFGKVVCWIQDSDCVPFAFCLVDEQVTVYNLAKGRGVTIGDSVGI................................................................................. 69
9 -5.820PF07168.11; K4BNE7_SOLLC/41-401; Ureide permease  ali follow..  11  72...............GLSVTEVITASITVVIGTTLNYYLDDKINKAEILFPGVGCFLIAV-GSAVHASNAADNKEKLEYFSNDSNNGVGTKDVTGSKPTNTNKVDMNDLENGEEKAKAGTALFLIEVENRRAMKVFGKSTYIGLA... 202
10 -5.740PF01869.20; Q6NC14_RHOPA/6-263; BadF/BadG/BcrA/BcrD ATPase family  ali follow..  13  165.AVLAETDVINMVSRGISSPNILRGIHESMADRLAKLLKTLGSLDGTVQMTGGLALDAGL........................................................................................ 223
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.