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Query: PF17248.2; X4ZEP5_9BACL/28-177; Family of unknown function (DUF5317 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NLRIRGGLWFPLLLLLQFAVFELNDRSSAFASISGIFFIAVYAAGLYLLWLNRSTPGFLFIFAGVFLNFLVMAVNGGKMPVSLDAAKVLDPYYVHLLESGTVATKHYLMDSATRLSFLGDIIPLSKPYPRTQVISIGDIVMNAGIFLYLQLast
1 -69.700PF17248.2; X4ZEP5_9BACL/28-177; Family of unknown function (DUF5317 topsan)  ali  100  1NLRIRGGLWFPLLLLLQFAVFELNDRSSAFASISGIFFIAVYAAGLYLLWLNRSTPGFLFIFAGVFLNFLVMAVNGGKMPVSLDAAKVLDPYYVHLLESGTVATKHYLMDSATRLSFLGDIIPLSKPYPRTQVISIGDIVMNAGIFLYLQ 150
2 -9.740PF06459.12; M3ZZY1_XIPMA/4218-4479; Ryanodine Receptor TM 4-6  ali follow..  11  161............................................ILNYLARNFYNLRFLALFVCFAINFILLFYKVTGEAEEEEEDEEHRWDEEDDENTLFDMDEFVLQES---TGYMLPTLRF-----LAVFHTVISLLCLVGYYCL.. 256
3 -8.310PF10177.9; W5KY66_ASTMX/13-159; Uncharacterised conserved protein (DUF2371 topsan)  ali follow..  20  47........................................................GVLVLMVGIAMAVL------GYWPRENLAHTVSLQRVNDATINSTKPIPPASRHVGFFEDFFSNYQYS------DNLKVFGPLVMGIGIFLFI. 127
4 -7.720PF15462.6; H0WM81_OTOGA/27-254; Bartter syndrome, infantile, with sensorineural deafness (Barttin)  ali follow..  18  7................................................VYGTFYAMGSVMVIGGVIWSMCQCYPKITFVPADSDFQGILSPKALGLLENGLATEKKRSRAPAPHAPYVRL.............................. 78
5 -7.650PF07573.11; A2R0K9_ASPNC/1-98; Nitrogen regulatory protein AreA N terminus  ali follow..  19  1.............................................................MSGLTLG-----GSGGVRPTQPAAFASLQDSADADRRSSTTTSNNPLHFPPTSSQ-LSDDFSFGSPISPADSSNAPDSLLHDSLF.... 81
6 -7.570PF14083.6; Q1LS22_CUPMC/40-140; PGDYG protein  ali follow..  12  1........................................................GPNRYQPG---DAIVTGATGDRWVVSRGRFDPR--YVAVGPNAHGESGPYRNKPVPVLAKEMTHAFAIARSTGGDVLTKPGDWLM......... 81
7 -7.360PF16116.5; R6Y5S7_9BACT/235-498; Domain of unknown function (DUF4832 topsan)  ali follow..  10  133..............................NVFDYIRDHLGYRIELQEMTAPAV------LLAGQANPVEISLINRGFSTLPVYLVLIDESGKVCHVALTDANVNDWQPYETGDSSCTPLLHTISTDLQIPLGLAKGMYSLGLWIP.... 246
8 -6.890PF12671.7; R5XR49_9CLOT/270-430; Putative amidase domain  ali follow..  12  38...............................................................GDCANFASQIMYESGTFSKNPTWNYENGAATKAWVNAQGFKNYLVYSGRGYYLAKGSY---EEVYKEAYKLRPGDIV.......... 111
9 -6.840PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51  ali follow..  16  12........................................................GVGLVALG------VVMIVWSLVPANTGF-------NNSSSGSGGDDGIDGKRNKASSVAFV--------------LAGSGVAMLLLSLCLGLR 78
10 -6.690PF02765.17; Q2Q1P8_9SPIT/34-194; Telomeric single stranded DNA binding POT1/CDC13  ali follow..  11  11..............................................................SGESQNFYGVIIDATFPYKTNKDKYICSLKVVDPSQHIKGLKGTGDGNDYATVVLYA-----KEFKDLPIVSRIGDIIRVHRA..... 88

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35