|
|
|
current user: public |
|
| Query: PF17248.2; X4ZEP5_9BACL/28-177; Family of unknown function (DUF5317 topsan), from PfamA32U |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 | |||||||
| # | Score | Template | Links and tools | %id | First | NLRIRGGLWFPLLLLLQFAVFELNDRSSAFASISGIFFIAVYAAGLYLLWLNRSTPGFLFIFAGVFLNFLVMAVNGGKMPVSLDAAKVLDPYYVHLLESGTVATKHYLMDSATRLSFLGDIIPLSKPYPRTQVISIGDIVMNAGIFLYLQ | Last |
| 1 | -69.700 | PF17248.2; X4ZEP5_9BACL/28-177; Family of unknown function (DUF5317 topsan) | ali | 100 | 1 | NLRIRGGLWFPLLLLLQFAVFELNDRSSAFASISGIFFIAVYAAGLYLLWLNRSTPGFLFIFAGVFLNFLVMAVNGGKMPVSLDAAKVLDPYYVHLLESGTVATKHYLMDSATRLSFLGDIIPLSKPYPRTQVISIGDIVMNAGIFLYLQ | 150 |
| 2 | -9.740 | PF06459.12; M3ZZY1_XIPMA/4218-4479; Ryanodine Receptor TM 4-6 | ali follow.. | 11 | 161 | ............................................ILNYLARNFYNLRFLALFVCFAINFILLFYKVTGEAEEEEEDEEHRWDEEDDENTLFDMDEFVLQES---TGYMLPTLRF-----LAVFHTVISLLCLVGYYCL.. | 256 |
| 3 | -8.310 | PF10177.9; W5KY66_ASTMX/13-159; Uncharacterised conserved protein (DUF2371 topsan) | ali follow.. | 20 | 47 | ........................................................GVLVLMVGIAMAVL------GYWPRENLAHTVSLQRVNDATINSTKPIPPASRHVGFFEDFFSNYQYS------DNLKVFGPLVMGIGIFLFI. | 127 |
| 4 | -7.720 | PF15462.6; H0WM81_OTOGA/27-254; Bartter syndrome, infantile, with sensorineural deafness (Barttin) | ali follow.. | 18 | 7 | ................................................VYGTFYAMGSVMVIGGVIWSMCQCYPKITFVPADSDFQGILSPKALGLLENGLATEKKRSRAPAPHAPYVRL.............................. | 78 |
| 5 | -7.650 | PF07573.11; A2R0K9_ASPNC/1-98; Nitrogen regulatory protein AreA N terminus | ali follow.. | 19 | 1 | .............................................................MSGLTLG-----GSGGVRPTQPAAFASLQDSADADRRSSTTTSNNPLHFPPTSSQ-LSDDFSFGSPISPADSSNAPDSLLHDSLF.... | 81 |
| 6 | -7.570 | PF14083.6; Q1LS22_CUPMC/40-140; PGDYG protein | ali follow.. | 12 | 1 | ........................................................GPNRYQPG---DAIVTGATGDRWVVSRGRFDPR--YVAVGPNAHGESGPYRNKPVPVLAKEMTHAFAIARSTGGDVLTKPGDWLM......... | 81 |
| 7 | -7.360 | PF16116.5; R6Y5S7_9BACT/235-498; Domain of unknown function (DUF4832 topsan) | ali follow.. | 10 | 133 | ..............................NVFDYIRDHLGYRIELQEMTAPAV------LLAGQANPVEISLINRGFSTLPVYLVLIDESGKVCHVALTDANVNDWQPYETGDSSCTPLLHTISTDLQIPLGLAKGMYSLGLWIP.... | 246 |
| 8 | -6.890 | PF12671.7; R5XR49_9CLOT/270-430; Putative amidase domain | ali follow.. | 12 | 38 | ...............................................................GDCANFASQIMYESGTFSKNPTWNYENGAATKAWVNAQGFKNYLVYSGRGYYLAKGSY---EEVYKEAYKLRPGDIV.......... | 111 |
| 9 | -6.840 | PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51 | ali follow.. | 16 | 12 | ........................................................GVGLVALG------VVMIVWSLVPANTGF-------NNSSSGSGGDDGIDGKRNKASSVAFV--------------LAGSGVAMLLLSLCLGLR | 78 |
| 10 | -6.690 | PF02765.17; Q2Q1P8_9SPIT/34-194; Telomeric single stranded DNA binding POT1/CDC13 | ali follow.. | 11 | 11 | ..............................................................SGESQNFYGVIIDATFPYKTNKDKYICSLKVVDPSQHIKGLKGTGDGNDYATVVLYA-----KEFKDLPIVSRIGDIIRVHRA..... | 88 |
FFAS is supported by the NIH grant R01-GM087218-01
|
|
|
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24. |