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Query: PF17316.2; G0VAE9_NAUCC/23-251; Petite colonies protein 10, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst NSAVFTHLHRYPVVSKLLTKVDSLPLVGRTTAFLANAGSKFHQRSPAPVKTIINKILLVTMALDQLVNLLVFKEGIDAFLTSYKNHSNKLGVWIAWFIVDYFANIFNMILTEFLIKPFHLKANENAAAVKNTEGNLPHLAKLTNTTKSLTTDLQSKVQSNLQFVPSKDETLERIDTYIKPTYEMGRQTYKMVSDSYETNLSKSESVPRAIVSTGIDLGNFTIEKLKSVSLast
1 -110.000PF17316.2; G0VAE9_NAUCC/23-251; Petite colonies protein 10  ali  100  1NSAVFTHLHRYPVVSKLLTKVDSLPLVGRTTAFLANAGSKFHQRSPAPVKTIINKILLVTMALDQLVNLLVFKEGIDAFLTSYKNHSNKLGVWIAWFIVDYFANIFNMILTEFLIKPFHLKANENAAAVKNTEGNLPHLAKLTNTTKSLTTDLQSKVQSNLQFVPSKDETLERIDTYIKPTYEMGRQTYKMVSDSYETNLSKSESVPRAIVSTGIDLGNFTIEKLKSVS 229
2 -16.300PF03036.16; I3JAM0_ORENI/19-398; Perilipin family  ali follow..  10  4QQTVVSRVSNLPLVSSACEVVSNAPLLKGVMDVAESGVRTLGAAATAGTKPLLNMIEPQLATVNEYTLKGL--DKMEEKLPILHQPADKVVSDTVGMVYQSVAGAKEAVMG--AVMGGVELTRAAVSGGINTVMGTRMGQMVSSGMGLALSQSEDWVDQNLPLTERELAAVSEPASSEVATSSDNPSYFVRLGKLSAKVQERALQHSLDRARHYRDAAYGTVAQITST. 235
3 -7.560PF11098.8; A1BIR5_CHLPD/1-139; Chlorosome envelope protein C  ali follow..  39.........................................................................................................................................GLELAGSVVETVAGTVGSLIDATG-IGAMLGRTGGVVGETIDRVAITVKDVSRSAGELYSDAVKNVDNVTDNAARAIGDAGVSASEAVRNIA 129
4 -6.770PF01387.17; F7GY62_CALJA/1-131; Synuclein  ali follow..  1..........................................................................................................................................MDVFMKGLSKAKEGVVAAAEKTK-VAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAAT 92
5 -6.730PF01442.18; L9KQJ6_TUPCH/68-256; Apolipoprotein A1/A4/E domain  ali follow..  2................................................LVDNWDTLGSTFQKVHEHLGPVAFWEKLEKETEELRREINKDLEDVRQKTQPFLDEIQKKWQEDLERYRQKVEPLSAQLREGARQKLMELQEQVTPLGEDLRDSVRAYADTLR-LAPYSEQMRKTLGARLEAIKEGGSASLAEYHAKASEQLSALGEKAKPVLEDIHQGLMPMWESFKTG. 184
6 -6.340PF17258.2; A0A059W5U3_STRA9/1-224; Family of unknown function (DUF5324 topsan)  ali follow..  2................................................................................................................................................TRKDSVRAATHSAK------DGVRHAAEVVAPYAGTAKDAAVHYSQEARTRLAPRVAEAQQARAQYDTHLSPRIEHARGALPPKV 81
7 -6.080PF10828.8; M9X6F6_MANHA/3-110; Protein of unknown function (DUF2570 topsan)  ali follow..  25..........................................................................................................................................INTLRAENQTQAQTIEQQQKANQRLADKLEQERQAVRKSANEMRNKVEIVQNEIKSILAQDSCAKADLPNGVADSIKRLHR.......... 108
8 -5.870PF07464.11; A0A212FM78_DANPL/32-181; Apolipophorin-III precursor (apoLp-III)  ali follow..  25........................................................................................................................EEFNKVLKEGSESVLSQISALSGSLQSALKEANGKAKEALEQAQANLQRTAEDLRKSHPEVEQQANALKAKLQDAVSKTVSETQKLVKEVSANIEQTNQKLTPKIKEA. 132
9 -5.710PF05802.11; C5B9R0_EDWI9/34-192; Enterobacterial EspB protein  ali follow..  11  96....................................................................................................................................................YANDLTRQSQEEQALSDYQHGMADQLLKRAEETKEKALKVSGDLREILATLTQAHEHLSSSV................... 157
10 -5.510PF18555.1; A0A150YLZ3_9BACI/3-395; MobL relaxases  ali follow..  12  259.........................................................................................................................................AIQKLPIDRSQWQYGYQSIDEARPYIDEMVDIIERFYKDEMKELLTRLDIEAEILRITYGDGSRYQMSRQEKLDELRRSMGNAVLIELRNY. 350

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.