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Query: PF17377.2; D6YUB2_WADCW/2-135; Family of unknown function (DUF5399 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst ATIDQLDISIYNLYAIRTRMMEQINQDLRLGEAGSIPPQTQLIDTMPKMTELDILLGVAPVVTPWAYFYPPKRYRFIRRSPFAFFRIVPSLGSLEEHTEHEEKAMSVSTNSPEEEKEKGAILALLDQIDKINNWLast
1 -96.900PF17377.2; D6YUB2_WADCW/2-135; Family of unknown function (DUF5399 topsan)  ali  100  1ATIDQLDISIYNLYAIRTRMMEQINQDLRLGEAGSIPPQTQLIDTMPKMTELDILLGVAPVVTPWAYFYPPKRYRFIRRSPFAFFRIVPSLGSLEEHTEHEEKAMSVSTNSPEEEKEKGAILALLDQIDKINNW 134
2 -7.310PF13902.6; F6UK18_MONDO/10-144; R3H-associated N-terminal domain  ali follow..  11  19....AKGRKRLQRMENSHYLMT-------LMERVECSPDDGDLALPAPPSIFAKACSNETYIEIWSDFMN----------------------SGEEQERVLLYLEEEATKKQKRKVPAKT.............. 106
3 -7.150PF12682.7; Q5L808_BACFN/5-159; Flavodoxin  ali follow..  14  27...DLYEIKPEVPYTEADLDWNDKKSRSSVEMRDA-LSRPAISGTLFHPEKYEVLF-----FPVWWYIAPTIINTFLESYDFAGKIVVP---ATSGGSGIGNCEKNLHKAYPDIVWKDGKLLNGQITRDLVTEW 151
4 -7.110PF11414.8; I3IUI1_ORENI/241-322; Adenomatous polyposis coli tumour suppressor protein  ali follow..  30  6............................................................................................................KQMKELEQEKDSLLAGLEVVERAREW 31
5 -6.350PF18377.1; G1KHZ7_ANOCA/140-270; FERM F2 acyl-CoA binding protein-like domain  ali follow..  8  7SSFEYLFEQGKYDFINDVASLKDLRTEQEIHQFKNESLGMAVLHLCHIALKSGLSLEEVAQRTSFKECIPRSFCRQIQQNNYLTKFRI------RNVFRRFLQRFQRHTMSTGKLTEQDIMHKYLATLENL... 131
6 -6.120PF15033.6; D3ZM98_RAT/1-123; Kinocilin protein  ali follow..  18  61..............................................................................KARFNLDHILPAIGNLRIHNSGPDHGEGRSSNNSNKEGARSGLSTVTRTLEKLK.. 115
7 -5.900PF15160.6; W5PK35_SHEEP/43-278; Spermatogenesis-associated serine-rich protein 1  ali follow..  11  120.............................LGNRRSLSERIVDKSLGRKKCVLDPRNGIPKLTPGDNPYMYPE----QSKGFHKAGSTLPPVNFSLVPYEKLEPLPQIPNLPFWVKEKANMLKSEIREVEELDDW 227
8 -5.680PF04287.12; Q6LN18_PHOPR/10-102; tRNA pseudouridine synthase C  ali follow..  18  2...................................................LEMLEAALRNAERWES-APPSNTALASAEPFAVDTLIPRMTQLIALKQPLPQHFELSPYVEEAMKHDSGVNIILGVTRELDN. 92
9 -5.670PF10779.9; XHLA_BACSU/9-75; Haemolysin XhlA  ali follow..  17  11..............................................................................................GEHKALEQRVSALERVSDRQDQQIMTLNEKLNKIEENTTW 50
10 -5.640PF14978.6; H0ZMC0_TAEGU/13-101; Mitochondrial ribosome protein 63  ali follow..  17  40........................................................................................PYLTQEQEYKHNTEERRAKWEAFKSLKQAKRYISDHLNHLNVTKKW 89
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;