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Query: PF17419.2; MAUJ_METEA/1-283; Methylamine utilization protein MauJ, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWIPYDLTGSLKAETSAASIQRSQADRSVRDVLVGFFVRNPITQSWEIDIRAEAVKEVLMAELDGMPTEIACYGGETGKLSEIIYRVKSAEPYAAFDACRHDLDDRLARWTLELGRGMTIAGWRVADPANEARWRCTPFRPSALDLDLNAVAFAPDDLKPLLRLYQRARNASDPAWRLLNAYAVLKCWRAGKAPFSLMPQQPAPVVTLEMLVHSGALGCAESFKDQPLASLVDALEVWRDAVLQDLEAPGEGAHGLRGEARWRLAHMASIADLAARETLIREILast
1 -137.000PF17419.2; MAUJ_METEA/1-283; Methylamine utilization protein MauJ  ali  100  1MWIPYDLTGSLKAETSAASIQRSQADRSVRDVLVGFFVRNPITQSWEIDIRAEAVKEVLMAELDGMPTEIACYGGETGKLSEIIYRVKSAEPYAAFDACRHDLDDRLARWTLELGRGMTIAGWRVADPANEARWRCTPFRPSALDLDLNAVAFAPDDLKPLLRLYQRARNASDPAWRLLNAYAVLKCWRAGKAPFSLMPQQPAPVVTLEMLVHSGALGCAESFKDQPLASLVDALEVWRDAVLQDLEAPGEGAHGLRGEARWRLAHMASIADLAARETLIREI 283
2 -8.920PF18736.1; H8KXM8_SOLCM/2-154; HEPN pEK499 p136  ali follow..  12  13...........................................................................................................................................................KRTKKLIETYDGVFNLTLLMNSVLSLIVLPQQHNSRIRKLAFMNQNLDEIPEINFVINSPHFQFDPRNFNYDLKNL---LNRIRNGISHIVIEDYDRNNNLGLHLELTTSQVRNLAFYIAEKYLE... 148
3 -6.960PF18869.1; A0A1F7Z354_9BACT/11-156; RnaseLS-like HEPN  ali follow..  9  7.......................................................................................................................................................QDLQELLRESVLLISTFGKWSKRFYAFIVFAKAYEGFLKTLETYFGKRFRVGKALNPALENHYREESIYDMLENYCPDALWETWKRGRNMLFHW--FPNESNVISYGDAKQIIFEILETMD........... 143
4 -6.730PF04030.14; ALO_ASHGO/192-522; D-arabinono-1,4-lactone oxidase  ali follow..  6  40WWYPYVRKCVLWRGVKTSEPAEKSRSSWWGTTLGRLVYESLLWLT--VNVYPSLTPFVERFIFRQQYGKVETFGNGDEAVQVDEWACPLNNGPEVLRSLDHSIAQAAQNKEFFVHVPIEVR------SNTTLPHEYKCPEDRTVTAPGPVYGNLLRPYLDNTPSHLRYAPLSDVTNPIHKWFTLFEDTLGAAKNFLGSTATAAGPVKSSDEYQDYEMRGMATKIKEWYGDNLKQFQKVRREQ......................................... 315
5 -5.930PF15935.5; I5B0B2_9DELT/91-316; RNase LS, bacterial toxin  ali follow..  4  1...........................HNNCITYRKIKQDDFELLLEYTEEAVKSESLEPYKTNNNHTIFKISSIYKDETTLTQYANQTILLQGRPLYIYNVIKSFINELIDFDQV------VEIESDLYKIDLKPDVVREELESRLFAVYGRFDEKILKVMALSLMKIDVELEDYSCCIYLRGLEGYIRML-KTVGRLGSLFDENKSYETMLFLKDDIKNDVVCKSLQNAYFMYVKHRHPLFH....................................... 224
6 -5.660PF16204.5; H0WSN6_OTOGA/416-637; BDHCT-box associated domain on Bloom syndrome protein  ali follow..  9  3AW-PDPCGSPVEEDSSGENFMKELAFPYLPSNPISPGEYLPTTALGKTGFLATTKNHCESMLLESSLQKSFVSNNETPKLEK-SSFFPGSVLTSTAVKDQNKNTASINDLEREIQASCEVDNFDIDDFDDDDDWENIMHNLA-------------------------ASKSSTTAHQ-----PIREGRPVKSVSERISSAKTNCLPVASTAQNINFSETIQSYTDKSEQD-----STYRN........................................... 213
7 -5.620PF14464.6; Q47D11_DECAR/80-200; Prokaryotic homologs of the JAB domain  ali follow..  10  33....LRLALCEPIEVSPHQIDYRVPTMDADETLAVDLHTHGYGSAFAKDDGDDQGIKVAGVCLHQPKPQALFRLVVNGRFRPLPHPWQA.................................................................................................................................................................................................. 121
8 -5.530PF05068.12; A6VLI6_ACTSZ/3-166; Mannitol repressor  ali follow..  9  4..................................................................................................................................................................PIYEKLNDVPSIRGFVTASVAIFDELVLLINRVFRKNDFAVKSVIDSLFETSGPLAALSIVLSQEAFEDISAFMQLKDKLNE----DSREYHFSDELIVAFTHKL................ 114
9 -5.490PF13958.6; R5RHC2_9FIRM/1-160; Toxin ToxN, type III toxin-antitoxin system  ali follow..  9  34.....................................................................VVLKIGDIKYYAPFTSPKEKHKKMKNSKDFRKIAGGTLGAINFNNMIPVPDQALILKDINNEPDQRYKRLLQNQYKEIKADWVHIQKTATNLRELVDKLNNFEKQVKFRCCNLFLLESIYM............................................................................................. 158
10 -5.430PF15146.6; W5N521_LEPOC/464-902; Fanconi anemia-associated  ali follow..  13  262...PFVASLRVSSDLLKTALQLSGSGPSVSSAVLHWLVSC---SPAGENIACEDIPVLSAVCPGGASLRLLAQEWADGPITAVEIRIESSSLAELCGLHFAVLQALLKEGVPEAGAARRLKGQSFVQLLQHTETLSKAVQ-EARGHIALGLGMSSRITEKLLHTYGQLRDSP............................................................................................................... 435
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.