current user: public
If you have questions about the server, please let us know.

Query: PF17428.2; E6U1F3_BACCJ/15-133; Family of unknown function (DUF5412 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst RKSLLIILICSLSFFCLIGYGVYWAFFDMNRLPTGEYLTEETSPDGTYTLKAYISDGGATTSYAIRGELVYNEKKNKTKNIYWNYREEDAEINWLDDNTVVINGHALNVLHDKFDYRNQLast
1 -63.200PF17428.2; E6U1F3_BACCJ/15-133; Family of unknown function (DUF5412 topsan)  ali  100  1RKSLLIILICSLSFFCLIGYGVYWAFFDMNRLPTGEYLTEETSPDGTYTLKAYISDGGATTSYAIRGELVYNEKKNKTKNIYWNYREEDAEINWLDDNTVVINGHALNVLHDKFDYRNQ 119
2 -10.900PF10647.9; D1BCN8_SANKS/337-589; Lipoprotein LpqB beta-propeller domain  ali follow..  11  98..........................VPADWLDGRKVESVQVSRDGARIAVVSSDTSGTRIDVA---GIVRGDTDLSDALVAGAAVVGASQVVWVDESTLAVLAQGQSSGARTH..... 182
3 -10.800PF15525.6; U5RX27_9CLOT/41-228; Domain of unknown function (DUF4652 topsan)  ali follow..  15  54......................................TWKSNKNGTYNACIEGKGSEALEEGTGKI-IIKGSQKVYSFQIENNTKLSPKYLEWADDKNLLVSNGSISKGGDLY..... 132
4 -7.620PF16328.5; Q8A0D4_BACTN/10-321; Domain of unknown function (DUF4961 topsan)  ali follow..  10  1.........IKIFFLLVLSLIVFGCSFLIKEVNVKQENEAGEMVAY--------IKAGEIATFTFSGEINIDGDASNETFIV-------APRSWNVRQNATVT................ 82
5 -7.520PF04619.12; O07093_ECOLX/22-160; Dr-family adhesin  ali follow..  12  51................................CNTEHAALRAQPDNYHQGKIVLIRDDYQARINVRLQATDGRAWNTNGDTVYRADAGN----WGGSLFVVVDGDNVDKPTGSY..... 128
6 -7.150PF16875.5; F5Y819_TREAZ/27-294; Glycosyl hydrolase family 36 N-terminal domain  ali follow..  16  96......................................TYAEKDSEAETLELILKDTLTGLRVILAYTVFEEYDAIARSIRYENTGQDDIEILSPGSMGMDFSGQDFRILHLHGDWMRE 176
7 -6.810PF16405.5; R5JCU2_9BACE/235-375; Domain of unknown function (DUF5013 topsan)  ali follow..  11  57...........................YDSAIENGKIWQKVTLPAGTYEFSFNVNTSKGNNLNPYGAVVVADATALASVNWGRTTGTKTLSFTLDEETTLLLG................ 141
8 -6.790PF10008.9; A3N1C1_ACTP2/18-114; Uncharacterized protein conserved in bacteria (DUF2251 topsan)  ali follow..  14  5.........................................STQHEQLVVMFYAMDLHQAENPVVDSLFVYSKADIDEKTLA---EPRRLEICWSENGYLLLNGYPHAA.......... 81
9 -6.620PF05910.12; M0RIH5_MUSAM/41-303; Plant protein of unknown function (DUF868 topsan)  ali follow..  16  134......................................KEQVVGQTHHSTRARFCDGGIDHEITVRCKGDRCDAKASELSVSVDKKL---SLRWRGNQTIFIDGSPVDLMWDVHDW... 215
10 -6.610PF05423.13; Q740V1_MYCPA/1-138; Mycobacterium membrane protein  ali follow..  10  2KRLWIPLVIVAVVVAGGLTVSRLHGIFGSEKRPSYADTRQQDTKPFNPKHVKYEVFGPAGAM----ADISYFDANGEPQHI------NGVELPWTFD-RILVDGVVKTERISH...... 126
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.