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Query: PF17461.2; Y005_CHLTR/16-363; Family of unknown function (DUF5423 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KGLLSRFLTAPDRHPKLRYVYDIALIAISILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVSDLAESQKSKEIADTVAAVSLPFILTGTAAGLMFSAIAVGGGAVILANPLFLMGSMTLGFALMSLHRVTYQYLSNREQWKQQKKLEQVELAAWESHLPKESKSSALEEVRYSPRLMKRGKTWRKRAIRRKNYTPIPLVDKTLQTMQPDALFSSTTTHSTDSEQILTSVSPQSSDTESSSSSSFHTPPNSDKELSDSNSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTTRRVVKLSRSERNAQHHRNKDQEQRQDSSESSEEDSSSDSSQKKKPSRKLast
1 -81.500PF17461.2; Y005_CHLTR/16-363; Family of unknown function (DUF5423 topsan)  ali  100  1KGLLSRFLTAPDRHPKLRYVYDIALIAISILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVSDLAESQKSKEIADTVAAVSLPFILTGTAAGLMFSAIAVGGGAVILANPLFLMGSMTLGFALMSLHRVTYQYLSNREQWKQQKKLEQVELAAWESHLPKESKSSALEEVRYSPRLMKRGKTWRKRAIRRKNYTPIPLVDKTLQTMQPDALFSSTTTHSTDSEQILTSVSPQSSDTESSSSSSFHTPPNSDKELSDSNSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTTRRVVKLSRSERNAQHHRNKDQEQRQDSSESSEEDSSSDSSQKKKPSRK 348
2 -11.900PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  14  15..........PPRGPPLSSSLGLALLLLALLFWLYIVMWTGGALLVLYSFALMLIIGALCILLLM--------------TLLLIAL-WNLHGQALFLIFGCLLVLGIWIYLLEMLWRLGLLIIALYLLLVDLLWLLLFLAILIWMYYHGQRHSDEHHHDDSLPHPQQATDDSGHESDSNSNEGRHHLLVSGAGDGPPLCSQNLGAPGGGPDNGPQDPDNTDDNGPQDPDNTDDNGPHDPLPQDPDNTDDNGPQDPDNTDDNGPHDPLPHSPSDSAGNDGGPPQLTEEVENKGGDQGPPLMTDGGGGHSHDSGHGGGDPHLPTLLLGSSGSGGDDDDPHGPVQLSYYD. 386
3 -10.000PF09786.9; B9HQ86_POPTR/12-670; Cytochrome B561, N terminal  ali follow..  13  1.................KFAYQ-ALTAKSLRPSKSALLF-----IVSLSSASAFSL-----------LSTISRENGLIEKMSFRIFSQEVAYLFAKAAQAVVG-----------LLFIGSVFSIFKAISLYRVKIAGVRITSPSKDARDQPQLTNRQLGLIGVKPKVEPVVSESSKKPPKSNPTSSASNVLVPIHQLITCSHQKSRVGSDKSNAGSGNKMASFSTPSKSRNSPSFYLVPGANSPLPSVQSSPAIDSAVSTPWSDKRASYTKEIRTEEQLEQFLAEVDEKISESAGKYATPPPTIGGFGMASPNTVASPANTPGVTRSTPLRPVRMSPGSQKFTTPPKI 310
4 -9.370PF12039.8; Q66225_9VIRU/1294-1746; Protein of unknown function (DUF3525 topsan)  ali follow..  11  1......LVFEPVTRGKFTFIYPFG-------CL-SMIVY-EGR----FVNQDATSVGDL-------KLTKSRRPLKAGHTVHLV--PFHVQKLLDSM-YSA-SHNCTTVILESIMYVIGFLAYGISWAVYMVLRPPQFAATCYQWAFPERTWDKSKMYQALGFAAGGTIPMEHVDNELEVLTVSPPPEDEISRQPKVNIPPPPNDEEVAMMTPLPAETMEKVFHDASRTPLPGENDDEMLMRASSIHLPKQTEEEVADLLEPEQLATVWRPEPVEVCPEQVGLAPEQRKDEAISEWWMSDDSVKCVENDVLYMLSFLHGTNIPEDIRLELVELVYAQITEDEEHRIPE 334
5 -9.360PF07220.11; D4HSK9_LEPIR/4-673; Protein of unknown function (DUF1420 topsan)  ali follow..  18  4.GLDANV-----AYPPLSVLYSIFLIGFYILKLFESSLWIRWQALLLSVILYPLALSALTPRFLMKSAA-------FLSVLGCANICFFVKNGTKNLVSISYYSN----IFKSIQYHSFFEKIGNDKKIKKSFSL..................................................................................................................................................................................................................... 139
6 -8.810PF05934.11; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)  ali follow..  12  283.............................................................LLIVNPIWLVPPTKALAVTFTFVTEPLKYIGKGTGEFIKALM----------PVLLQIPVLVILALAVL-------YGAGQSVPMLRHFRGPEREPPRALEPDDRRRQKELDYRFHGGAGDADFSYRGPAGSIEQGPYDKMHVCERDVLRQRQVNMRFPSGNKSPEVLRAFDLPDTEAQEHPEVVPSHKPSIVNTSLKETSELPRESTLAECSQCAKDGSGQVPSTAESSPIVEKAQLKTDSECRPHSTEAAAAAARGTDPVSSPC..................... 538
7 -8.300PF04290.12; Q7VVJ0_BORPE/56-186; Tripartite ATP-independent periplasmic transporters, DctQ component  ali follow..  17  11................VRYLTDQSFA------------WTE--EISVFLLIVLTMVGAIRIEILADNGSPRQYLMALTAHSLVVFFFALLTVLSARLVYDEFRYEETSPAIGVPTWWY-WMPLLAAVITLRVA....................................................................................................................................................................................................................... 124
8 -8.080PF10710.9; E6U1D2_BACCJ/1-133; Protein of unknown function (DUF2512 topsan)  ali follow..  12  1................MKHVIALLIKFGFVSLVLLSTLTFFEVAISILFAAFIAVI----PAYVIGDLLIYPRYGNFIASLADLGLYSIVLWLLNVTVMDGIVPTLGFALLA-------AFFISFLEAIYHEFVLVKAFNMKKGTMFSPPQFSTEFAED............................................................................................................................................................................................. 133
9 -7.920PF06075.12; B9ILI5_POPTR/4-694; Plant protein of unknown function (DUF936 topsan)  ali follow..  12  4.GILLKLLQSMNSAARV-----------PLLQVIGIV--------------PALAGSDLGFYVQLSDSLNS----------TYVSLS-------------------TDLILTN-------LQLG--FVYIDRF-----DFDSPVPRVSGIRPIAGRHSFVGTPEPLIARISASKKEFVIQPVADSEYSVDPIAVYLSNNKKFDEFPRNDHNKKGEVTAKVTRQALAPRDNVMVDETATAKRFSSPATAKRFSSPATAKRSVSVGKKNAALVERDPSPAAKGKRSASPVPSKCMVPSLLAAKEENRKVAREPAIIVPSRYRQPSPSGRKQPSPNARRASISPGKRLSG. 296
10 -7.800PF07158.11; Q8P4U0_XANCP/1-149; Dicarboxylate carrier protein MatC N-terminus  ali follow..  22  2.....................TPQIATILGLVIMFIVATALPINMGAVAFALAFIIGGVWVGLDGKEVLAG--PGDLFLTLVGITYLFAINGTIDLLVHWAVAVRGRIVAIPWVMFVITGLLTAF............................................................................................................................................................................................................................... 108

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.