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Query: PF17627.2; INCE_CHLTR/1-132; Inclusion membrane protein E, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MECVKQLCRNHLCLDSLTGPVRSVLTQGTTAEKVQLVVSCLGVVCSIICLALGIAAAAVGVSCSGFAIGLGVIAILLGIVLFAISALDVLEDHGLVGCPFKLPCKSSPANEPTVQFFKGKNGSADKVILVTQLast
1 -101.000PF17627.2; INCE_CHLTR/1-132; Inclusion membrane protein E  ali  100  1MECVKQLCRNHLCLDSLTGPVRSVLTQGTTAEKVQLVVSCLGVVCSIICLALGIAAAAVGVSCSGFAIGLGVIAILLGIVLFAISALDVLEDHGLVGCPFKLPCKSSPANEPTVQFFKGKNGSADKVILVTQ 132
2 -7.950PF16311.5; H2L5R6_ORYLA/1-133; Transmembrane protein 100  ali follow..  16  37............................VNEVQLTAATGGAELSCYRCTIPFGVVVLIAGIVVTVVAYSFGLVLLSAGLLLLASSAI............................................. 105
3 -7.540PF14965.6; H3AVH4_LATCH/34-216; Negative regulator of p53/TP53  ali follow..  25  40...VETLYRIWTDLLDVLGVDASNLTHYFSPTAVTSNPTRAVLLVGAVLLAYWFLALFIGVLFSLLHAVFGRMFWIVRVILFALSCLYILQKH....................................... 129
4 -7.230PF10233.9; J3NH67_GAGT3/19-131; Uncharacterized conserved protein CG6151-P  ali follow..  25  1........................................LGILSMLLSFALGIANI---FIFNFVIIIFSVICLVSSFIVLFIEVPLLLR......................................... 48
5 -7.020PF15033.6; D3ZM98_RAT/1-123; Kinocilin protein  ali follow..  17  13.................................LQLACVALGLVAG--SIIIGVSVSKAAAAVGGIFLGAAGLGLLIFAYPFLKARFNLDHILPAIGNLRIHPNSGPDHGEGRSSNNSNKEGARSGLSTVTR 109
6 -6.850PF07123.12; C6SYI0_SOYBN/1-132; Photosystem II reaction centre W protein (PsbW)  ali follow..  19  45.....................CSMEEKPSSSSNIGMGASLLAAAVAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGL............................................. 110
7 -6.840PF09719.10; R6NMM3_9CLOT/15-143; Putative redox-active protein (C_GCAxxG_C_C)  ali follow..  14  2......................................NCAQAVFCAFSDELGFDKDTALRISAGFGGGIGRLREVCGAVSGMTMTLSYKFACTDPNDRQRKAALYALIQRAAGEFKAETGSIVCRELL... 92
8 -6.780PF05915.12; F6WJI3_MONDO/57-193; Eukaryotic protein of unknown function (DUF872 topsan)  ali follow..  14  41.............ISNGTQRSYRAFCSWTQHPLIQKNRRVVLASFLLLSLGLMLILVGVGLQVTPSPGVSSAIFFVPGFLLLIPGVYHVI.......................................... 117
9 -6.450PF10762.9; Q6D556_PECAS/1-88; Protein of unknown function (DUF2583 topsan)  ali follow..  15  2..........................KRKNVAALGNVLMGLGMILMIGGIGFSIASQFPKLNVPEYMTYIDLVGIFSGAIFWLVGA.............................................. 61
10 -6.360PF02659.15; MNTP_SHIDS/30-182; Putative manganese efflux pump  ali follow..  22  81..............................................TTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMM.......................................... 124
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.