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Query: PF17723.1; A9AUR9_HERA2/2-120; Ribbon-Helix-Helix transcriptional regulator family, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst ADIEKVSMNLSVVDLGQIDLLVDQGFYSSRTDFFRAAIRTRLAGHDEAIKQAVVRTSSVIGVISFDREHLERIQRNNEQVRVVVVGLLILSNDISPELAQATIKSLKVYGSLRASAAVKLast
1 -68.500PF17723.1; A9AUR9_HERA2/2-120; Ribbon-Helix-Helix transcriptional regulator family  ali  100  1ADIEKVSMNLSVVDLGQIDLLVDQGFYSSRTDFFRAAIRTRLAGHDEAIKQAVVRTSSVIGVISFDREHLERIQRNNEQVRVVVVGLLILSNDISPELAQATIKSLKVYGSLRASAAVK 119
2 -20.500PF01402.21; Q8ZX60_PYRAE/47-86; Ribbon-helix-helix protein, copG family  ali follow..  30  2.....ISVHVPKKMLEELDELVRRGIFPNRSEAIRAALRDLLYK........................................................................... 40
3 -17.400PF03693.14; PARD1_MYCTU/1-80; Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH  ali follow..  22  2..GKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRET......................................................................... 45
4 -9.920PF15919.5; E1VAV2_HALED/3-129; HicB_like antitoxin of bacterial toxin-antitoxin system  ali follow..  26  88GKSHKINVTLPELLIKRIDTAVAKQVYQSRSGFLSRAA................................................................................. 127
5 -8.880PF09274.10; Q9F809_ERWAM/1-76; ParG  ali follow..  15  32GKSKRVNVNFNEEKHTRFKAACVKN--TSITDVINQLVDNWLTEHE......................................................................... 76
6 -7.850PF17363.2; A0A0F4LLM4_9LACO/37-106; Family of unknown function (DUF5388 topsan)  ali follow..  16  7..TVPINIRVDNHIRNQISALLNLGLGKSQKDFVKNVVNHTIEE........................................................................... 48
7 -7.090PF12441.8; A1BIF8_CHLPD/6-84; CopG antitoxin of type II toxin-antitoxin system  ali follow..  12  40PTMKTISLRLPEQMLNRIKVLANERDVPYQS-LLKMFLKE............................................................................... 78
8 -6.950PF12651.7; A5N8S1_CLOK5/8-51; Ribbon-helix-helix domain  ali follow..  1.NRTRIYNAVDTILYTKLMQLSKEIMIP-ISKLLDKAVELVPREY.......................................................................... 43
9 -6.350PF13001.7; M7TV10_BOTF1/13-513; Proteasome stabiliser  ali follow..  13  1..VGKVEMRIALAKDDKLEAILKP-KLASEHQSVRNKVISTCQHVKIRLAGNKDIVLPVAALLKQYKEHPESSMLRHFDLMFIQQSVGKLSSKDQMDLIPTLIHGLA............ 111
10 -6.240PF00168.30; BON3_ARATH/52-157; C2 domain  ali follow..  12  1...SQIELTLSASNLLDCDITSKSDPMIGRTEVILNNLNPKWIEKITVSFQFEAVQTLVFHVYDVDTRYHNVPVKTLKLKDQDFLGEGTCV............................ 102

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.