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current user: public |
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Query: PF17723.1; A9AUR9_HERA2/2-120; Ribbon-Helix-Helix transcriptional regulator family, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . | |||||||
# | Score | Template | Links and tools | %id | First | ADIEKVSMNLSVVDLGQIDLLVDQGFYSSRTDFFRAAIRTRLAGHDEAIKQAVVRTSSVIGVISFDREHLERIQRNNEQVRVVVVGLLILSNDISPELAQATIKSLKVYGSLRASAAVK | Last |
1 | -68.500 | PF17723.1; A9AUR9_HERA2/2-120; Ribbon-Helix-Helix transcriptional regulator family | ali | 100 | 1 | ADIEKVSMNLSVVDLGQIDLLVDQGFYSSRTDFFRAAIRTRLAGHDEAIKQAVVRTSSVIGVISFDREHLERIQRNNEQVRVVVVGLLILSNDISPELAQATIKSLKVYGSLRASAAVK | 119 |
2 | -20.500 | PF01402.21; Q8ZX60_PYRAE/47-86; Ribbon-helix-helix protein, copG family | ali follow.. | 30 | 2 | .....ISVHVPKKMLEELDELVRRGIFPNRSEAIRAALRDLLYK........................................................................... | 40 |
3 | -17.400 | PF03693.14; PARD1_MYCTU/1-80; Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH | ali follow.. | 22 | 2 | ..GKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRET......................................................................... | 45 |
4 | -9.920 | PF15919.5; E1VAV2_HALED/3-129; HicB_like antitoxin of bacterial toxin-antitoxin system | ali follow.. | 26 | 88 | GKSHKINVTLPELLIKRIDTAVAKQVYQSRSGFLSRAA................................................................................. | 127 |
5 | -8.880 | PF09274.10; Q9F809_ERWAM/1-76; ParG | ali follow.. | 15 | 32 | GKSKRVNVNFNEEKHTRFKAACVKN--TSITDVINQLVDNWLTEHE......................................................................... | 76 |
6 | -7.850 | PF17363.2; A0A0F4LLM4_9LACO/37-106; Family of unknown function (DUF5388 topsan) | ali follow.. | 16 | 7 | ..TVPINIRVDNHIRNQISALLNLGLGKSQKDFVKNVVNHTIEE........................................................................... | 48 |
7 | -7.090 | PF12441.8; A1BIF8_CHLPD/6-84; CopG antitoxin of type II toxin-antitoxin system | ali follow.. | 12 | 40 | PTMKTISLRLPEQMLNRIKVLANERDVPYQS-LLKMFLKE............................................................................... | 78 |
8 | -6.950 | PF12651.7; A5N8S1_CLOK5/8-51; Ribbon-helix-helix domain | ali follow.. | 4 | 1 | .NRTRIYNAVDTILYTKLMQLSKEIMIP-ISKLLDKAVELVPREY.......................................................................... | 43 |
9 | -6.350 | PF13001.7; M7TV10_BOTF1/13-513; Proteasome stabiliser | ali follow.. | 13 | 1 | ..VGKVEMRIALAKDDKLEAILKP-KLASEHQSVRNKVISTCQHVKIRLAGNKDIVLPVAALLKQYKEHPESSMLRHFDLMFIQQSVGKLSSKDQMDLIPTLIHGLA............ | 111 |
10 | -6.240 | PF00168.30; BON3_ARATH/52-157; C2 domain | ali follow.. | 12 | 1 | ...SQIELTLSASNLLDCDITSKSDPMIGRTEVILNNLNPKWIEKITVSFQFEAVQTLVFHVYDVDTRYHNVPVKTLKLKDQDFLGEGTCV............................ | 102 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98. |