current user: public |
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Query: PF18160.1; C6BRH8_DESAD/1-192; SMODS and SLOG-associating 2TM effector domain family 5, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 | |||||||
# | Score | Template | Links and tools | %id | First | MKEKLESLSDNVWKTMKSRFTAAERTKRKHQALVFTISFLSIAQVIVAIGSLCGVDFPYIASAKIEFLTITVSIIILVIANQDSLGVLLNQSASYHRCSNKLHELLGRINAELENETVAKEIYLGFSKEYSEVLEFYDLNHDMNDFLKMASERSNVLDMSCLKRFRVCCKYYWSIYGMAFLYCAIPFILSYF | Last |
1 | -81.900 | PF18160.1; C6BRH8_DESAD/1-192; SMODS and SLOG-associating 2TM effector domain family 5 | ali | 100 | 1 | MKEKLESLSDNVWKTMKSRFTAAERTKRKHQALVFTISFLSIAQVIVAIGSLCGVDFPYIASAKIEFLTITVSIIILVIANQDSLGVLLNQSASYHRCSNKLHELLGRINAELENETVAKEIYLGFSKEYSEVLEFYDLNHDMNDFLKMASERSNVLDMSCLKRFRVCCKYYWSIYGMAFLYCAIPFILSYF | 192 |
2 | -25.800 | PF18186.1; A0A0S7BUI3_9CHLR/15-182; SMODS and SLOG-associating 2TM effector domain family 4 | ali follow.. | 10 | 1 | LEGQIRECYGRVVYTHKTHEKCSDQRVKEQHRLKLSQIIFSAITTCGLIVVIFG---NPEASKVSAILSALFSASLFALNTYTKETDYGALAQKHKQTASKLWDVRESYLSLLTDLKMNCLSCESARNKRDALQKILVE..................................................... | 136 |
3 | -12.700 | PF18169.1; N8S5X3_ACIGI/1-178; SMODS and SLOG-associating 2TM effector domain 6 | ali follow.. | 14 | 4 | .....AELLRYIAETGNVGFGAKKNFATYDLIEKM--GWIGFISTAVGILGLII---DALSTKLVSAIFVIIGICGLYISFYDKDKNYENAGKELTKLFNELKSLYFDVKCLSENSDVSAVRIQDIETRYFSL........................................................... | 131 |
4 | -12.500 | PF18181.1; A3JZX8_9RHOB/101-223; SMODS and SLOG-associating 2TM effector domain 1 | ali follow.. | 13 | 3 | ................RNRIDNQQAYSKKSTASKAALSFWVVATIVLYIIAAIALNAEQLGLPSATLAFDPLIVIVTSALGWLQMKRHGELMASYNLTAHEIGILLGDLEAV-----KTEDEFSDLINEAELAFSREHTQ.................................................... | 122 |
5 | -10.900 | PF14015.6; K9Q2U5_9CYAN/32-139; Protein of unknown function (DUF4231 topsan) | ali follow.. | 12 | 7 | ......................DKRASRDQKKYFRLRMITIVGGVIVPALVSLNNIENTRIRNAISWITFVTSLTVAVSAAVEEFFQYGESYRRFRNTAEGMKI........................................................................................ | 88 |
6 | -10.500 | PF18184.1; I2MVX6_9ACTN/19-178; SMODS and SLOG-associating 2TM effector domain 3 | ali follow.. | 7 | 7 | .....................TDAVAITRQREAIGSVRRQLLLLVVGAAAAALPAWKLGDTIQLAGLISALAYAGVLAIGIRASRSGAKSHWQLNRSAAEYIKSMCWRYSVHGTPDARSGDPDELFAQRLEEGLRELSK..................................................... | 125 |
7 | -9.950 | PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51 | ali follow.. | 10 | 1 | .............................NSGSQYALCALGVGLVALGVVMIVWSLVPANTGSSVAFVLAGSGVAMLLLSLCLGLRNKQREQLRRQEIQNQRDAAREQEERETAEERAQRYAVPS----YEEVVGSGQYPVRQSN............................................... | 133 |
8 | -9.330 | PF18142.1; A0A094D5Q1_9PEZI/92-211; SMODS and SLOG-associating 2TM effector domain | ali follow.. | 11 | 1 | ..................RVIKNEANAKRGYKNFSWLINGCLGLQVIVAASLTALGAADASHSAITALGAINTVVAGLLTFL-KGSGLPNRLTYYHTEWKQIREFIEQRERDFSRPGCDHGVVRMIETMYEEVKKD........................................................ | 120 |
9 | -8.510 | PF07426.11; H2YTE0_CIOSA/6-167; Dynactin subunit p22 | ali follow.. | 10 | 5 | LEERIAQLEERCLPEDGNDKSLLAGLNKVNRMLTSATDRERFKEVFSKVPQITEYLSPGYIDSISMNTQCEKEAILASEHNIRKSHELFAEIDQLSNFTKRIGTLEQTQLKQLESMNSISEDFQALLLAYNQLVSSLSENFVHWDW.............................................. | 162 |
10 | -8.300 | PF14735.6; A7RRC9_NEMVE/120-355; HAUS augmin-like complex subunit 4 | ali follow.. | 13 | 78 | LPAILQKEKSLLQEERKR---GQDRLMRDRQFRQYYQTLLQSLESLEKLITKH-VRYDKVTTDWLAAKCEAMCLKIRVLQNQLIRDTYTPETAALKKIRGLLEVAKEEEERELQRAREALQAYESVGMGFEALVREYSALMIEIDNKKWALSELRQ.................................... | 236 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11. |