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Query: PF18182.1; A0A0F3GNU5_9BACT/377-494; minimal CRISPR polymerase domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst YFGFDGDATGDYLETAFVMSGIDEEEVQMRSNILREAINKLKKLIKKTTKDHKSIIFAEGDNILFKSKFDNTLLNEIQSVYKKETGLSSSIGYGKTLRDVMIALRLAKAKNGESLVGILast
1 -67.700PF18182.1; A0A0F3GNU5_9BACT/377-494; minimal CRISPR polymerase domain  ali  100  1YFGFDGDATGDYLETAFVMSGIDEEEVQMRSNILREAINKLKKLIKKTTKDHKSIIFAEGDNILFKSKFDNTLLNEIQSVYKKETGLSSSIGYGKTLRDVMIALRLAKAKNGESLVGI 118
2 -18.100PF05165.12; GCH3_METTH/1-249; GTP cyclohydrolase III  ali follow..  15  134.AHIDINGITETMTDIV-PAYDTSFIVNRVQHFLMKKLIKE----------GALLFFIGGDNFMSPCN-EPQGLLRIINEIDDEINVALKAGIGKAANLADLALEEIRGGFTYDLVHV 246
3 -10.800PF00990.21; Q55955_SYNY3/706-867; Diguanylate cyclase, GGDEF domain  ali follow..  14  36.VMLDIDYFKLY--NDTLGHQAGDHCLRIVAAILQESVHRTSDLVARY----------GGEEFALILP-AVIVAQRIKTLMDAANYVTVSIGIHCAVKCADDALYQAKKRGRNG.... 162
4 -10.100PF00817.20; Q74KV6_LACJO/16-168; impB/mucB/samB family  ali follow..  15  74......................NFEKYRAVSAEIHQLMHKITDRVESVALDEAYLDVTENKLNLT----PVRIAALLQERIYQRIGLTSSFGVSYNKFLAKMGSE............. 153
5 -8.640PF16264.5; I6L8Y5_STRMU/3-213; SatD family (SatD)  ali follow..  14  1YIAIIGDLISS----------KAITNRPKSQKQLKNLLNQINKKYKELLKSAFTIT---GDEFQALLVPNPQIFQIIDEIALGFKPYQIRFGVGSAYWHARAAIDYIHDKNDYGSNHL 124
6 -8.260PF04446.12; F2PRD7_TRIEC/6-137; tRNAHis guanylyltransferase  ali follow..  12  21.IRIDGRGFHKLSDKYGFEKPNDRRALDLMNSAAQAVMKDIPDLI---------IAYGVSDEFSFVFHRNCSLFERRSSKLVSTIVSTFTAHYTYKWTS................... 109
7 -7.670PF18664.1; A0A083ZVM1_9GAMM/167-283; CdiA C-terminal tRNase domain  ali follow..  7  30FIFTSGPNKGKTVDFMFTTAKGTAKEIEGMNKFFNNNWDKNVAQLHTHLNKADIVPL----DFRNLNAENQQRLLSYINTLSPADKAKV............................. 114
8 -7.300PF03431.13; O64304_BPQBE/23-569; RNA replicase, beta-chain  ali follow..  11  248LATVD-DTISLALVELLMPPEWFKVLLALRSPKESLIFAALARSLCELLGLRPSDVTVYGDDIILPSDACSPLVEVFS-----------YVGFRTNKKKTFSSGPFRESCGK...... 377
9 -7.200PF00475.18; HIS7_SYNAS/33-177; Imidazoleglycerol-phosphate dehydratase  ali follow..  13  38......EDMGICLGKVVKDAMGDKTGMVRYGSATIPMDETLCAVTLDVSGRPYLVYHVAFSAGARAGEFDLQLIREFFKAFSDHSGITLHINLFYGENNHHIAEAVFKAFAR...... 143
10 -6.870PF17914.1; A0A0D6YKF0_MASLA/151-328; HopA1 effector protein family  ali follow..  8  31YFNLESSLGAVTFMSAITS---------LLNDRAVRFQIKVMNHPKRLRRRDNFILYVPDEVWRTYRSEVAEVQARHQDLLREDVPGPLGRGWSFA--EEPIGITGMLSFGQHRAQLA 140
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.