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Query: PF18532.1; A0A0W0WHF5_9GAMM/255-392; Domain of unknown function (DUF5621 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst TARELLELFSKYHEERDAYLKSGMKTNLTDGIPVPRVQRSLNNHLDFYVKNADFFINQLERELFKISYPKTFNYLFEQNQFDIRFPEDSHVTQEQVQYELNSLKQRNPKLFERLQSRGVKEINGIITVGSPGGLYHLELast
1 -82.100PF18532.1; A0A0W0WHF5_9GAMM/255-392; Domain of unknown function (DUF5621 topsan)  ali  100  1TARELLELFSKYHEERDAYLKSGMKTNLTDGIPVPRVQRSLNNHLDFYVKNADFFINQLERELFKISYPKTFNYLFEQNQFDIRFPEDSHVTQEQVQYELNSLKQRNPKLFERLQSRGVKEINGIITVGSPGGLYHLE 138
2 -8.690PF14367.6; A1BGJ9_CHLPD/7-167; Domain of unknown function (DUF4411 topsan)  ali follow..  11  1...............................................FLLDSNVLMTAARQYYAFDIAPGFWSAL------DRKAGDGDLRSIDRVHAEINRGNDE................................ 53
3 -6.970PF14724.6; I3J9S5_ORENI/8-771; Mitochondrial-associated sphingomyelin phosphodiesterase  ali follow..  7.................................ANLKADATTKPLLQRCQDLVKIIDEYPAKELHLIFPWLVESVFSLDGVIAGWNLRFLHSRSNEYNIVMDFLNPSGPMMKLVYKLQAEEYKYEIPINYPGPVKAC. 112
4 -6.300PF15190.6; TM251_DANRE/2-140; Transmembrane protein 251  ali follow..  12  28...EISQTYNRLALAQVEKTSGAQAKWPGDASSSSPSSTSWIVTLKTRLLLLPFWV----ATIFLLPYLQVFLFLYSCTRADPKTV.................................................... 107
5 -6.280PF07737.11; LEF_BACAN/69-286; Anthrax toxin lethal factor, N- and C-terminal domain  ali follow..  21  172.....................................EQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYM............................................................... 209
6 -6.240PF07515.11; A9C317_DELAS/487-612; Putative conjugal transfer nickase/helicase TraI C-term  ali follow..  16  2....................................SGEHFMAWLKHGIATRRLIINDAKALVHTVVSPGVFQYAQEHPQVGKLAKQENLQDWQWVQKRFERLQ.................................. 76
7 -6.140PF18704.1; U4UB22_DENPD/398-467; Chromatin organization modifier domain 2  ali follow..  11  45...................................................EKLWSTIEPQSLVETAYPELVEAFRQ............................................................. 70
8 -5.970PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D  ali follow..  1...........MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCFRTHKKQEVLEV----LYTLIHGCERENQAELNVDITGMEKIHAQLKEYANP................................ 93
9 -5.940PF13305.6; A0A0T6LX08_9ACTN/99-202; Tetracyclin repressor-like, C-terminal domain  ali follow..  14  1........................................FRALAHGYVA-------------FAMAEPGLFRTGFQHEGTLRTNDSPEQVRSYSMLTEALDDLVARGLM............................ 57
10 -5.670PF10804.8; Y996_STAA8/1-155; Protein of unknown function (DUF2538 topsan)  ali follow..  19...................................LEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIY-----YKNSIDNPIVDGACYIALPEIFNSVDVFESELPF............................. 88

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35