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current user: public |
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Query: PF18532.1; A0A0W0WHF5_9GAMM/255-392; Domain of unknown function (DUF5621 topsan), from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . | |||||||
# | Score | Template | Links and tools | %id | First | TARELLELFSKYHEERDAYLKSGMKTNLTDGIPVPRVQRSLNNHLDFYVKNADFFINQLERELFKISYPKTFNYLFEQNQFDIRFPEDSHVTQEQVQYELNSLKQRNPKLFERLQSRGVKEINGIITVGSPGGLYHLE | Last |
1 | -82.100 | PF18532.1; A0A0W0WHF5_9GAMM/255-392; Domain of unknown function (DUF5621 topsan) | ali | 100 | 1 | TARELLELFSKYHEERDAYLKSGMKTNLTDGIPVPRVQRSLNNHLDFYVKNADFFINQLERELFKISYPKTFNYLFEQNQFDIRFPEDSHVTQEQVQYELNSLKQRNPKLFERLQSRGVKEINGIITVGSPGGLYHLE | 138 |
2 | -8.690 | PF14367.6; A1BGJ9_CHLPD/7-167; Domain of unknown function (DUF4411 topsan) | ali follow.. | 11 | 1 | ...............................................FLLDSNVLMTAARQYYAFDIAPGFWSAL------DRKAGDGDLRSIDRVHAEINRGNDE................................ | 53 |
3 | -6.970 | PF14724.6; I3J9S5_ORENI/8-771; Mitochondrial-associated sphingomyelin phosphodiesterase | ali follow.. | 7 | 7 | .................................ANLKADATTKPLLQRCQDLVKIIDEYPAKELHLIFPWLVESVFSLDGVIAGWNLRFLHSRSNEYNIVMDFLNPSGPMMKLVYKLQAEEYKYEIPINYPGPVKAC. | 112 |
4 | -6.300 | PF15190.6; TM251_DANRE/2-140; Transmembrane protein 251 | ali follow.. | 12 | 28 | ...EISQTYNRLALAQVEKTSGAQAKWPGDASSSSPSSTSWIVTLKTRLLLLPFWV----ATIFLLPYLQVFLFLYSCTRADPKTV.................................................... | 107 |
5 | -6.280 | PF07737.11; LEF_BACAN/69-286; Anthrax toxin lethal factor, N- and C-terminal domain | ali follow.. | 21 | 172 | .....................................EQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYM............................................................... | 209 |
6 | -6.240 | PF07515.11; A9C317_DELAS/487-612; Putative conjugal transfer nickase/helicase TraI C-term | ali follow.. | 16 | 2 | ....................................SGEHFMAWLKHGIATRRLIINDAKALVHTVVSPGVFQYAQEHPQVGKLAKQENLQDWQWVQKRFERLQ.................................. | 76 |
7 | -6.140 | PF18704.1; U4UB22_DENPD/398-467; Chromatin organization modifier domain 2 | ali follow.. | 11 | 45 | ...................................................EKLWSTIEPQSLVETAYPELVEAFRQ............................................................. | 70 |
8 | -5.970 | PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D | ali follow.. | 6 | 1 | ...........MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCFRTHKKQEVLEV----LYTLIHGCERENQAELNVDITGMEKIHAQLKEYANP................................ | 93 |
9 | -5.940 | PF13305.6; A0A0T6LX08_9ACTN/99-202; Tetracyclin repressor-like, C-terminal domain | ali follow.. | 14 | 1 | ........................................FRALAHGYVA-------------FAMAEPGLFRTGFQHEGTLRTNDSPEQVRSYSMLTEALDDLVARGLM............................ | 57 |
10 | -5.670 | PF10804.8; Y996_STAA8/1-155; Protein of unknown function (DUF2538 topsan) | ali follow.. | 8 | 19 | ...................................LEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIY-----YKNSIDNPIVDGACYIALPEIFNSVDVFESELPF............................. | 88 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |