current user: public
If you have questions about the server, please let us know.

Query: PF18719.1; A0A0Q3WY42_9BACI/40-166; ArlS sensor domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst IRQVMLHEEATNISQELSEIINFYKNRPFSSMEDIQNNSDIIKQLLEKDQTLYVLNQKLQGFAISKTDNKKPKSLIEYEPVKEKTVDLTTIDGRKIYVGRAPIVSNGFSGYIGVVDPLTRYHQMMTSLast
1 -68.500PF18719.1; A0A0Q3WY42_9BACI/40-166; ArlS sensor domain  ali  100  1IRQVMLHEEATNISQELSEIINFYKNRPFSSMEDIQNNSDIIKQLLEKDQTLYVLNQKLQGFAISKTDNKKPKSLIEYEPVKEKTVDLTTIDGRKIYVGRAPIVSNGFSGYIGVVDPLTRYHQMMTS 127
2 -10.400PF17152.4; F9ZZV9_METMM/42-151; Periplasmic sensor domain  ali follow..  12  1........EHRALLVNAKSTANMIGFNAALVFEDGPSATDVLKALRNSPNVIAAQLYTVRGEPIARYSADSSDIDLPRLLSEPDKQRNQSHWKWLTHTLIQPIFHTEVVGYLALL............ 110
3 -8.410PF10144.9; SMP_YERPE/1-162; Bacterial virulence factor haemolysin  ali follow..  11  33....FSLSHQLARSEQVEELAQTLAKQSGDDNIDSQKVDAILQQLTQSSRILDASVYQIDGTLVASAGENVKVR-------DRLALDGKRPGSYFNHQIVEMIAGSGPSGFLRMTLDTHVLATESKQ 159
4 -6.970PF09984.9; B7VK74_VIBTL/31-175; Uncharacterised signal transduction histidine kinase domain (DUF2222 topsan)  ali follow..  13  4.....YQDLEGQVVNTGTSIIEPLAIASESGMESRESVRQLISYAHRKNSSIAVFDE--RHELFVTSNFHPDFESLTYPKDKPIPHLSSSNLLDNTLILRTPIIAEQAIGYIAIELDLSSLRLQQYQ 143
5 -6.400PF06855.12; Y467_STRP1/4-70; YozE SAM-like fold  ali follow..  5  2FYSWLMTQRNPKSNEPVAILADLVFDDTTFHTNDFELISRYLEDQASFSFNLGQFDE...................................................................... 60
6 -6.380PF18698.1; A0A0D6Z9D0_9BACI/38-166; Histidine kinase sensor domain  ali follow..  10  2.....INETRKDMIHTAEKIARVLKEHPGNEEALALE---IAWELIDDNEKVTVIKDQNT--YLYSPSSDETTHVPISFYTTDKDLSLVFERDKQYLMIGVPLHQQE-NGAVFIYQSLA........ 129
7 -6.180PF14827.6; A9B1A1_HERA2/45-312; Double sensory domain of two-component sensor kinase  ali follow..  13  4.....LNQSLRTSATNTGVGLETIEAQILDNLRLIVTSPATAEAFSKNDSRLIALNADGQVLVDVLSTELAKDLIQAVLRGQVDDYGDKYASLLTMFFVVAPVSSEQVVGAIIYAEPLER....... 137
8 -6.090PF15182.6; F7EZI1_ORNAN/21-88; Otospiralin  ali follow..  26  21.....................................................................................................PFSTTDFWSYVEYFRTLGAYQQI... 43
9 -5.710PF09308.10; F7YS51_VIBA7/41-278; LuxQ, periplasmic  ali follow..  7  23....LFNFRLSLLQINQDSSAKNAGLVKAIRKGDNDSIDQFFFGVDQLEDIRFISDS--DSLMWEDGNAQFYGIEQNELVNMSRKVALSNNGYAYLMVRRTPVQSGEVIGFLHLATVLNNNYVLAET 161
10 -5.450PF07476.11; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus  ali follow..  11  20VDKMILKGVDVLPHALINNVEEKLGFQGEKLREYVRWLSDRILSLRTSYHPTLHIDVYGTIGLIFDMDPVRCAEYIA---------SLEKEAQGLPLYIEGPVDAGNKPDQIRLLTAITK....... 132
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.