current user: public
If you have questions about the server, please let us know.

Query: PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst TGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTLast
1 -6.250g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}  ali 3D-neighbors follow..  14  32................................KKISELDAFLKEPALNEANLSNLKAPLDIXAVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKLVHELDE.. 165
2 -5.910d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}  ali model 3D-neighbors follow..  15  77....................................SVVMTITGSEAPDEWIVIGGHLDAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNVVSALQL-DMTN........................... 182
3 -5.860d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  45............KEFGLDSVELAHYDVLLXEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTK..... 191
4 -5.810d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  8  2..............................................FVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE............ 101
5 -5.690d1uewa1 b.36.1.1 (A:8-108) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  7.........................................................VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPAKLKVGDRILAVNGQSIADIVKLIKDAGLSV............................ 88
6 -5.600d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  3..............................................FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE............. 101
7 -5.540d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  9  7..............................................FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNE............ 106
8 -5.530d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  16...................................................VILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGA--TNEEVYNIILESKSEPQ.................... 100
9 -5.510d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  5..............................................FQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRD............ 104
10 -5.510d1by1a1 a.87.1.1 (A:2-209) beta-pix {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  18QNILETENEYSKELQTVLSTYLRPLQTSE-SSANISYLMGNLEEISFQQMLVSLEECTKLPEAQQRGGCFLNLMPQMKTL-PSAVNVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLS 186
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.