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Query: PF00290.20; TRPA_MAIZE/94-347; Tryptophan synthase alpha chain, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRSLAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALPLast
1 -97.300d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}  ali model 3D-neighbors follow..  99  8MAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNAL. 260
2 -91.500d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  33  8FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKPTIPIGLLMYANLVFNNGIDAFEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNASPKQMLAELRSFVSAMKAASR 267
3 -91.200d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  36  7FAKARSEGRAALIPYLTAGFPSREGFLQAVEEV-LPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQAA--VADGVVVGSALVRALEEGRSLAPLLQEIRQGLQRLEANPG 261
4 -89.500d5kmya1 c.1.2.0 (A:2-269) automated matches {Legionella pneumophila [TaxId: 297246]}  ali model 3D-neighbors follow..  36  8LEKLKANRKKMLSPYITAGDPYPELTVSLMHQLVKSGADVLELGIPFSDPMAEGPVIQRAMERALAHSIHCDDVLNMVRQFRKTTETPVILMGYLNPIEQYGYDLFVEAGADGTILVDLPPEEADGVSRVWQKHGLYSIYLCSPTTSAERMNFINQHANGYLYYVSLKGVTGSDALKLPELKAQYLQRKAQSKLPLMVGFGIKTPEMAAQVAEF-ADGVIVGAALINEIIEAEAKKDPLQASGALLSSMRQAID 266
5 -89.500d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  37  2......FKDGSLIPYLTAGDPDKQSTLNFLLAL-DEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEK--GREATEFLKKKVEELLG... 247
6 -88.500d5tcha_ c.1.2.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  33  9FDSCRANNRAALIGYLPTGYPDVPASVAAMTALVESGCDIIEVGVPYSDPVMDGPTIARATEAALRGGVRVRDTLAAVEAISIA-GGRAVVMTYWNPVLRYGVDAFAAAGGLGLITPDLIPDEAQQWLAASEEHRLDRIFLVAPSSTPERLAATVEASRGFVYAASTMGVTGARDAVSQAAPELVGRVKAVSDIPVGVGLGVRSRAQAAQIAQY-ADGVIVGSALVTALTEG------LPRLRALTGELAAGVR 258
7 -88.000d3thaa1 c.1.2.0 (A:1-247) automated matches {Campylobacter jejuni [TaxId: 192222]}  ali model 3D-neighbors follow..  30  2VDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KALVFMVYYNLIFSYGLEKFKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKV-ADGVIVGTSIVKCFKQGN-----LDIIMKDIEEI..... 246
8 -87.900d5kina_ c.1.2.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 170187]}  ali model 3D-neighbors follow..  33  8LNAIKAAGKGIFVPYIMAGDHELDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETE--IPLVIMTYFNPLFQYGVENFADTAVKGLIIPDLPHEHANFVEPFLANTDIALIPLVSLTTGIERQKELIEGAEGFIYAVAINGVTGKSGNYRADLDKHLAQLHQVADIPVLTGFGVSSQADLERFNAV-SDGVIVGSKIVKALHQGEPIQDFIRQAVAYQK....... 257
9 -36.600d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  8..............HITKLDPDRTNTDEIIKAVADSGTDAVMIS---GTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVVYDVDVPTVLNSADGDWIAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEV----KVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKGIDA...................... 225
10 -35.600d3vzxa_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  1...MYDVTEWK---HVFKLDPNKDLPDEQLEILCESGTDAVIIG--GSDGVTEDNVLR-------------------MMSKVRRFLVPCVLEVSAIEAIVPGFDLYVLNSKNADWIVGMHQKAMKEYGELMSMEEICKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGVLGD--IEAVKKTKAVETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFDRALKTVAAVKG............. 227
11 -16.400d4utua1 c.1.2.0 (A:1-220) automated matches {Clostridium perfringens [TaxId: 195102]}  ali model 3D-neighbors follow..  16  2................................LDVVKGNLIVSCQALDEPLHSSFIMGRMAIAAKQGGAARAQGVNDINEIKEVTKLPIIGIIIYITPTMKEVDELLKTDCEMIALTKRKRPNGENVKDLVDAIHAKGRLAMADISTLEEGIEAEKLGFDCV-STTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITR........................... 208
12 -16.000d3q58a1 c.1.2.0 (A:1-226) automated matches {Salmonella enterica [TaxId: 90370]}  ali model 3D-neighbors follow..  16  1......................MSLLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRI-ENLRTVRPHLSVPIIGIIVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFI--TTLSGYTGPITPVEPDL-AMVTQLSH-AGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQWFSHAVKR............. 226
13 -13.900d3ovpa_ c.1.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  12.....................DLANLGAECLRMLDSGADYLHLDV-FVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKP-------------------EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGG--QKFMEDMMPKVHWLRTQPSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMR----SEDPRSVINLLRNVCSEAAQ... 219
14 -13.600d3f4wa_ c.1.2.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  18  5...............LALDELTLPEAMVFMDKV-VDDVDIIEVGTPFL--IREGV--------------------NAIKAIKEKYHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQ-QAAGRKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQ.......... 209
15 -12.300d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  6...............VALDNQTMDSAYETTRLIAEE-VDIIEVGTILC--VGEG--------------------VRAVRDLKALYHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTG-GLA-LEDLPLFKGIPIHVFIAGRSIRD----AASPVEAARQFKRSIAEL..... 212
16 -12.200d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}  ali model 3D-neighbors follow..  18  79.......................................................................................................ENIKEAGGSGVIL--LKLNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVK-------AKDPYAKIVELAKPLSEL.. 225
17 -12.100d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}  ali model 3D-neighbors follow..  16  13.....................DFSRLGEEIKAVDEAGADWIHVDV------MDGRFVP-----------NITIGPLIVDAIRPLTKKTLDVHLMIVEPEKY-VEDFAKAGADIISV--NASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGG--QSFIPEVLPKIRALRQMCDPWIEVDGGLK-PNNTWQVLEAGANAIVAGSAVFNA-----------PNYAEAIAGVRNSKR 220
18 -12.000d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  18  3.........................AKRIIACLDVKDGRVVKG-RDSGDPVELGKFYSEIGIDELASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET--ASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVNTGILLRDWVVEVEKRGAGEILLTSI-DRDGTKSGYDTEM---IRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF........................... 229
19 -11.800d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  6.......GGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAV-------------RRMNIFEASQPNFLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGIL------LNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSG----ADDPVKMARAMKLAVEAGRLS.. 232
20 -11.700d3ctla_ c.1.2.0 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  6.............SLMCMDLLKFKEQIEFI----DSHADYFHIDI------MDGHFVP-----------NLTLSPFFVSQVKKLATKPLDCHLMVTRPQDY-IAQLARAGADFITLPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAG--QPFIPEMLDKLAELKAWREYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLF--NHAENIDEAWRIMTAQILA...... 219
21 -11.700d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  20  93VTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLS--------PHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFALTPNVTDIVSIARAAKEGGADGVTATNT----------------SGLMGLKADGTPWPAVGAGKRTTYG--------GVSG-TAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN---------QDFTVIQDYCTGLKALLY 307
22 -11.600d4a2ra1 c.1.2.4 (A:2-245) automated matches {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  17  36ILEFNKSNITAIIAYYTRKSPSVERDPIEYAKFMERYAVGLSI---------------------KTEEKYFNGSYEMLRKIASSVSIPILMNDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIG---------ARFISIFSMNETGEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFLISSSLMR........................... 237
23 -11.500d3tsma_ c.1.2.0 (A:) automated matches {Brucella melitensis [TaxId: 359391]}  ali model 3D-neighbors follow..  16  43LEAKRAAGQFALIAEIKKASPSKGDPPALAKAYEEGGAACLSV---------------------LTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLS---------SRLLGVNNRNRSFEVNLAVSERLAKMAPSDRLLVG-GIFTHEDCLRLEKSGIGTFLIGESLMR........................... 247
24 -11.400d4x2ra1 c.1.2.1 (A:1-247) automated matches {Actinomyces urogenitalis [TaxId: 525246]}  ali model 3D-neighbors follow..  17  2..........................LTLLPAVDVADGKAVRL---YGSPIEAARDWVEAGAE-LDAAFGRGSNAPLLERIVGEVGIKVELSGGIRDDAS--LTRALKAGAARVNLGTAALEDPQWTARVIAEHGEKIAVGLDVRGTTLAARGWTKEGGDLWQTLDRLNEAGCRRYVVTDVTELLRQVAARTSAPVVASGGISSLEDIAALARLGVDSAIVGKALYN........................... 225
25 -11.100d5a5wa_ c.1.2.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  12  2............................IIPALNLIDGTVVRL-DYGNDPLPRLQDYAAQGAGVLGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEED--VAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLAQENSGVSLEQLVETYLPVGLKHVLCTDISRAGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRGTGVRGVIVGRALLEGKFTVKEAIQCWQNV............ 245
26 -10.900d2tpsa1 c.1.3.1 (A:14-235) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  16  15............VYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEK---------------AQAACREAGVPFIV--------NDDVELALNLKADGIHIEDANAKEVRAA--------IGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGV----SMISAISQAEDPESAARKFREEIQTYKTG.. 221
27 -10.800d6bmaa1 c.1.2.0 (A:1-258) automated matches {Campylobacter jejuni [TaxId: 192222]}  ali model 3D-neighbors follow..  14  46....RVEKEVKIIAEVKKASPSKGDPLSIALNYEKNKAAAISV---------------------LTEPHFFKGSLEYLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHLGLEALVEIHDKEDLSKAIFAG---------ADIIGINHRNEDFTMDMSLCEKLIPQIPNSKIIIA-GLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL............... 258
28 -10.700d5csra_ c.1.1.0 (A:) automated matches {Thermoplasma acidophilum [TaxId: 273075]}  ali model 3D-neighbors follow..  21  75.......................................................................................................DMMIDLGITGSIL--LPRDTIINTLKKASKLDFTIVLCVENAEEAKYFREYEPDFIAY---RDLIGGDVSVSTAKPEIIEDIVKIYEGTGTSVLVGAGIKTGEDVRRSIGLGARGILVASGVVKS.......................... 202
29 -10.200d3o63a1 c.1.3.0 (A:1-221) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  11............LYLCTDARRERGDLAQFAEAALAGGVDIIQL--------------KGSPGELRFGPLQARDELAACEILADAAHRYGALF-----AVNDRADIARAAGADVLHL-DLPVNVARQILAPDTLIGRS-------THDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITS-------ADDPRAAAEQLRSALTAA.. 221
30 -10.100d4n6fa_ c.1.31.0 (A:) automated matches {Amycolatopsis orientalis [TaxId: 797057]}  ali model 3D-neighbors follow..  18  129.............................................................................................................................................LLPFILPDLATARALEEAGCAALRVMASPVASGRGIAN---AAIRELIEQIGIPVVVEGGIGSARHVAEAMELGASATLVNTALVRAESPLLMAAAMRQAALA.......... 229
31 -9.810d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}  ali model 3D-neighbors follow..  19  89LPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNI--SCPNVKH--------GGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPN--IVPIAKAVEAAGADGLTMINT---------------------LMGVRFDLKTRQPILANITG--------GLSGP--AIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTAN---FADPFVCPKIIDKLPELMDQ...... 293
32 -9.770d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  37FKEALLRPGLSVIAEVKRQSPSEGDPVEAALAYARGGARAVSV---------------------LTEPHRFGGSLLDLKRVREAVDLPLLRKDFV--VDPFMLEEARAFGASALLIVALLGELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLG----INNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMR........................... 241
33 -9.710d3cu2a_ c.1.2.0 (A:) automated matches {Histophilus somni [TaxId: 205914]}  ali model 3D-neighbors follow..  10  5.SLIQQLKQQKLSVGILSA--NWLQLNEEVTTLLENQINVLHFDI------ADGQFSS-----------LFTVGAIGIKYFPTHCFKDVHLMV------LEVAKAVVANGANLVTL--IEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGT--KYPSELILDRVIQVEKRLEKLINIDGSMT-LELAKYFKQGTHDWLVSGSALFS------------GELKTNLKVWKSSI. 235
34 -9.660d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  14  13...................DRRLKPEVESVREALEGGATAIQM----------------------IKNAPTREMYEIGKTLRQLTREYDALF-----FVDDRVDVALAVDADGVQL-DMPIEVAKEIAPNL--------IIGASVYSLEEALEAEKKGADYL--AGSVFPTKTKEDARVIGLEGLRKIVESVKIPV-VAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEE.......... 203
35 -9.590d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  33.EVLSGKERVKIIAEFKKASPSADASLEDFIRMYDELADAISI---------------------LTEKHYFKGDPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIR--------PKIIGINTRDDTFEIKKNVLWELLPLVPDDTVVVA-GIKDPRELKDL-RGKVNAVLVGTSIMK........................... 235
36 -9.540d3w07a_ c.1.2.3 (A:) automated matches {Methanothermobacter thermautotrophicus [TaxId: 187420]}  ali model 3D-neighbors follow..  11  7...............LAMDLMNRDDALRVTGEVREY-IDTVKIGYPL---LSEG--------------------MDIIAEFRKRFGCRIIAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR--PERLSRLREIIQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDL......... 215
37 -9.490d2vp8a_ c.1.21.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  13  37.....................SDAAARDAVHRAVADGADVIDVGGVKAGPGER-----------VDVDTEITRLVPFIEWLRGAYPDQLISVDTWRAQV---AKAACAAGAD--LINDTWGGVDPAMPEVAAEFGAGLVCAALPRTRPFRVDAVISQVTAAAERAVAAGVAREKVLIDPAHDLLLRHVADLVMTGWPVLMALSNKDVVGETLGVDLTERLEGTLAATALA........................ 252
38 -9.310d1jcmp_ c.1.2.4 (P:) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  39FYDALQGARTAFILECKKASPS--------KGVIRDDFDPARIAAIYKH---------ASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALG---------AKVVGINNRDCDLSIDLNRTRELAPKLGHNVTVIS-GINTYAQVRELSH-FANGFLIGSALMAHDDLHAAVRRVLLGENKV......... 259
39 -9.200d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Thermoproteus tenax [TaxId: 2271]}  ali model 3D-neighbors follow..  16  10...FARRGKSIILAYDFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYYDPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGYTIYPGS-------------------EWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKKQVEGVLEAGALGIAVG----RNVWQRRDALKFARALAELVYG...... 251
40 -9.100d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  38.....................NEEIVIKEAKTQVEKGAEVLDVNFGIES--------------------DVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVD---EELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFE--ALKILERHDFSDRVIFDPGV-EVLKTIEFISSFNTTVGFGLPDRSYYNTAFLVLGISKGLSSAIMN........................... 238
41 -9.000d2djla_ c.1.4.1 (A:) automated matches {Trypanosoma cruzi [TaxId: 5693]}  ali model 3D-neighbors follow..  12  86.DLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNL--SCPNVPG---------KPQVAYDFEAMRTYLQQVSLAYGLPFGV-----------------------MPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGK--YILPTALANVNAFYRRCPDKLVFGCGVYSGEDAFLHILAGASMVQVGTALQ----------EGPGIFTRLEDELLEIMA 295
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.