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Query: PF00817.20; Q74KV6_LACJO/16-168; impB/mucB/samB family, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IDMDAFYASVEMRDNPSIRNKAVLIGGDPKKNKGHGVVATANYIARSYGAHSAMPTAKAVRLIPAEKLVIIQPNFEKYRAVSAEIHQLMHKITDRVESVALDEAYLDVTENKLNLTDPVRIAALLQERIYQRIGLTSSFGVSYNKFLAKMGSELast
1 -83.500d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}  ali model 3D-neighbors follow..  31  6VDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILP--NAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAAD 156
2 -71.800d3gv7b1 e.8.1.7 (B:26-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  33  8VDLDCFYAQVEMISNPELKDKPLGVQ-------QKYLVVTCNYEARKLGVKKLMNVRDAKEKCP--QLVLVNGDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTELHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSG 186
3 -64.300d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  39  32IDMDAFYAAVEMRDNPELKDKPIAVGS-------MSMLSTSNYHARRFGVRAAMPGFIAKRLCP--QLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSD 251
4 -57.700d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  23  29IDMNAFFAQVEQMRCGLSKEDPVVCV-------QWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASN 276
5 -8.940d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  12  1.....MKAGIDEAGKGCVIG-PLVVA---------GVACSDEDRLRKLGVKDSKKLSQGRRICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVERE 147
6 -7.070d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  9..LNRIWGDIFELREELKEELKGFTVEEVSEVFNAYLYIDGKWEEMKYPH----PAFAVKPGGEVGQGFYFVFAFPKEELSKEFIEDVIRAFEK-LFIYGAENFLEDFYNFEHPI-SGDEVWDRIVNSDEEMINFEVDLGFDKEEVKREIKR. 155
7 -7.040d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  13  1.............................................................................YKMLTQRIDRAFEEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLSA 78
8 -6.680d3op1a2 b.43.5.0 (A:186-305) automated matches {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  13  5..................................RGMVVHGNARGRTIGYPTANLVLLDRTYMPADGVYVVDVEIQ--RQKYRAMASVGKNVTFDGEEARFEVNIFDFNQDIYGETVMVYWLDRIRDMTKFD---------SVDQLVDQLKAD 112
9 -6.420d2d0oa1 c.8.6.1 (A:93-254) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}  ali model 3D-neighbors follow..  13  5......................TMIGHNPKTPGGAGL-----------GTGITITPQELLTRPADAPYILVVSSAFDFADIASVINASLRAGYQITGVIQRDDGVL----VSNRLEKPLPIVDEVLYIDRIPLGMLAAIEVAVPGKVIETLSN 121
10 -6.110d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  7........SLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQ--------CTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRHQYPISVDSECVDIDKRQILLQEEKLLLAVLKTSLIGMFD................... 133

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.