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Query: PF01262.21; Q9S227_STRCO/141-353; Alanine dehydrogenase/PNT, C-terminal domain, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst APQVGAYHLMAANGGRGVLPGGVPGVLAGRAVVIGGGVSGWNAAQIAIGLGFHVTLLDKDITKLREADKIFGTKIQTVVSNAFELEKACLEADLVIGAVLIPGAKAPKLVTNELVSRMKPGSVLVDIAIDQGGCFEDSHPTTHAEPTFPVHNSVFYCVANMPGAVPNTSTYALTNATLPYIVELADRGWAEALRRDPALAKGLNTHDGKVVYRLast
1 -65.100d1saya1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}  ali model 3D-neighbors follow..  51  5SVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGA................................................. 168
2 -56.300d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  29  5AVIDGAYEFARAFPM---MMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEP----GKIVVKHGVKIVGHTNVPSR................................................. 183
3 -17.800d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  22.........................IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT--------MDEACQEGNIFVTTT-----GCIDIILGRHFEQMKDDAIVCNIGHFDVE................................................................................ 116
4 -14.800d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Fungus (Magnaporthe grisea) [TaxId: 148305]}  ali model 3D-neighbors follow..  13  4.............................SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHPISLDVNDDAALDAEVAKHDLVISLI------PYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGXYSAMAKLVGVPCAVAVKFVLD...................................... 145
5 -14.000d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Methanopyrus kandleri [TaxId: 2320]}  ali model 3D-neighbors follow..  13  20.......................GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAV---ELARDLGGEAVRFDELVDHLARSDVVVSAT----AAPHPVIHVDDVREARSPILIIDIAN----------PRDVEEGVENIEDVEVRTIDDLRVIARENLER.......................................... 156
6 -14.000d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  2CTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSIVGRPLAALLANDGATVYSVDVNNTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV----PSENYKFPTEYI---KEGAVCINFACTKNFSDDVKEKASLYVPM.................................................................. 146
7 -13.900d4dlla1 c.2.1.0 (A:29-190) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  19  5.............................KITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQA-------RAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMAS.................................................................................... 97
8 -13.800d4ypoa1 c.2.1.0 (A:1-180) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  21  12.........................IQGRKVGVIGYGSQGHAHSLSLRDSGVQVRVGLKQGSRSRPKVEEQG-------LDVDTPAEVAKWADVVM--VLAPDTAQAEIFAGDIEPNLKPGDALFFGH..................................................................................... 105
9 -13.700d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  20  40.........................IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-------------EGPWRFTNSLEEALREARAAVCAL---NKHTRGLVKYQHLALMAEDAVFVNVG--RAEVLD............................................................................. 134
10 -13.300d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}  ali model 3D-neighbors follow..  20  40........................EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN----------PELEKKGYYVDSLDDLYKQADVI--SLHVPVPANVHMINDESIAKMKQDVVIVNVS--RGPLVDTD........................................................................... 140
11 -13.100d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}  ali model 3D-neighbors follow..  13  3.............................TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEHPDLLTSDIGLAVKDADVILIVVPAIHHAS---IAANIASYISEGQLIILNPGATGGALEFRKILREN-----APEVTIGETSSMLACLPAAKAGWALEQIGSVLPQY............................. 180
12 -12.600d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}  ali model 3D-neighbors follow..  14  41........................DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH-------ATREDMYPVCDVVTLNCPLHPE-TEHMINDETLKLFKRGAYIVNTA--RGKLCD............................................................................. 142
13 -12.600d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21  41........................EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNA-----------TQVQHLSDLLNMSDVV--SLHVPNPSTKNMMGAKEISLMKPGSLLINAS--RGTVVD............................................................................. 138
14 -12.500d3phha2 c.2.1.0 (A:105-263) automated matches {Helicobacter pylori [TaxId: 85962]}  ali model 3D-neighbors follow..  19  5..................FYLSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCD---------CFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDL...................................................................................... 104
15 -12.300d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}  ali model 3D-neighbors follow..  22  46........................RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD--------GVERALGLQRVSTLQDLLFHSDCV--TLHCGNEHNHHLINDFTVKQMRQGAFLVNTA--RGGLVD............................................................................. 146
16 -12.200d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  2..................LLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIV--------EIEAIATDMLIQLEEEGLNVVPCA..................................................................................... 104
17 -12.100d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. PCC 6803 [TaxId: 1148]}  ali model 3D-neighbors follow..  15  1............................MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ------LVDEAGQDLSLLQTAKIIFLCTPIQLILP---TLEKLIPHLSPTAIVTDVASVKTAIAEPASQ......................................................................... 103
18 -12.100d2uyya1 c.2.1.0 (A:262-429) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  8.............................KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTP-------AEVVSTCDITFACVSDPKAAKDLVLGPSVLQGIRPGKCYVDMST.................................................................................... 101
19 -12.100d3g0oa1 c.2.1.0 (A:6-169) automated matches {Salmonella typhimurium [TaxId: 602]}  ali model 3D-neighbors follow..  16  2............................FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGA------CGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDVAHLMKPGSAVMVSST.................................................................................... 97
20 -12.000d4gwga1 c.2.1.0 (A:1-176) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  2...........................QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGA--QSLKEMVSKLKKPRRIILVKAGQAVDDFIEKLVPLLDTGDIIID------GGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSL-PHIKTIFQGIAAK.......................... 162
21 -12.000d2gf2a1 c.2.1.0 (A:41-201) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  1.............................PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSP-------ADVAEKADRIITMLPTSINAIEAYSGANILKKVKKGSLLIDSST.................................................................................... 94
22 -11.900d3fr7a1 c.2.1.0 (A:86-307) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  19  42.............................QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAESGTLGDIWETVSGSDLVLLLISDAAQAD---NYEKIFSHMKPNSILGLSHGFLLGHLQSAG.......................................................................... 152
23 -11.900d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  27..........................PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID-----NIMPKAMKVGGRIVSISIPEQ................................................................................. 128
24 -11.900d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  15........................IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELE--GHEFDLIINATSSGISGDIPAIPSSL---IHPGIYCYDM...................................................................................... 112
25 -11.800d3ws7a1 c.2.1.0 (A:1-161) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  20  1............................MRVGFIGLGIMGGPMATHLLKAGFLAAVYNRTREKTKPFAEAGVYVAESP-------ADLAKRVDVVIVMVSDAPDVEQVLFGPSVVEGARPGLIVVDMST.................................................................................... 95
26 -11.800d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}  ali model 3D-neighbors follow..  11  44........................KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQA-------TFHDSLDSLLSVSQFFSLNA---TPETRYFFNKATIKSLPQGAIVVNTA--RGDLVD............................................................................. 145
27 -11.800d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  6.............................HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKSTDAASVVHSTDLVVEAIV-ENLKVKNELFKRLDKFAAEHTIF----ASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKA.......................... 180
28 -11.800d4e12a1 c.2.1.0 (A:1-189) automated matches {Acinetobacter baylyi [TaxId: 202950]}  ali model 3D-neighbors follow..  19  6.............................NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVDDLAQAVKDADLVIEAVP-----ESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASA.......................... 176
29 -11.700d5je8a1 c.2.1.0 (A:1-163) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  19  3.............................KIGFIGLGNMGLPMSKNLVKSGYTVYGVDLNKEAEASFEKEGGIIGLSI-------SKLAETCDVVFTSLPSPRAVEAVYFGAELFENGHSNVVFIDTST.................................................................................... 96
30 -11.700d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  13  1............................MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLA------LPYAMSHQDLIDQVDLVILGI-----KPQLF--ETVLKPLHFKQPIISMAAG--------ISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS.................................. 130
31 -11.600d1yjqa2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  1............................MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSD---AVKSLASTLPVTTPILLI---HNGMGTIEELQNIQQPLLM--GTTTHAARRDGNVIIHVAN........................................... 134
32 -11.400d4j0ea1 c.2.1.0 (A:1-198) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  15  13.............................NVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKALDRAMKAISQSVTHLSKKQKGVSTAVADADLIIEAAI-ENIDLKRGIFAQIEQSCKKDSIL----TTNTSSFLLEDVAKGLQDKTRFGGLHFFNPVPVMKLLEVIRSDDTSDETYATLIKFGTA.......................... 186
33 -11.300d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors follow..  16  21.....................GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST-------PCDVFAPCAMVAGAANNVIADEAASDILHARGILYDFVANAGGAI.............................................................................. 145
34 -11.300d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  13  1............................MRVALLGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTA----RDLKNILREKIVVSPL..................................................................................... 97
35 -11.200d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  23  41........................EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS---------PARAAQLGIELLSLDDLLARADFI--SVHLPTPETAGLIDKEALAKTKPGVIIVNAA--RGGLVD............................................................................. 140
36 -11.200d1xc2a3 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}  ali model 3D-neighbors follow..  16  1............................MNVYFLGGGNMAAAVAGGLVKQGGRIYIANRGAEKRERLEKELG--------ETSATLPELHSDDVLILAV------KPQDMEAACKNIRTNGALVLSVAAG--------LSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEA--------------EVSETDRRIADRIMKSVGLTV.. 149
37 -11.000d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  30..........................PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEV-VNSRNADEMAAHLKSFDFILNTVAAPHN-------DDFTTLLKRDGTMTLVGAPAT................................................................................. 128
38 -11.000d2hk8a2 c.2.1.7 (A:106-266) Shikimate 5-dehydrogenase AroE {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  16  15........................EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFP------LEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDI...................................................................................... 109
39 -10.900d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  21  11.............................KIVIVGGGKLGGLFARYLRASGYPISILDREDWAVAE--------------------SILANADVVIVSVPINLTLE---TIERLKPYLTENMLLADLTSVKREPLAKMLE......................................................................... 99
40 -10.800d4cjxa2 c.2.1.0 (A:125-297) automated matches {Trypanosoma brucei [TaxId: 999953]}  ali model 3D-neighbors follow..  21  36........................EICGKRVVVLGRGIAGLPVATLLANEDATVTVVHSATPLCD-------------------IADIVRASDIVVSAA------QPGLVRGEWI---KLGAAVIDVGTTPADPSKVPGYRLVGDVCFDVARKRAAYITPVPGGVPVTVSMLLKNTL.................................... 164
41 -10.800d3tnla2 c.2.1.0 (A:113-291) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  11  15........................DIIGKKMTICGAGGAATAICIQAALDGVEISIFNRKDDFYANAEKTVEKINSFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDV...................................................................................... 126
42 -10.800d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}  ali model 3D-neighbors follow..  15  6.............................QAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKFGNVDLVVEAVV-ENPKVKQAVLAEVENHVREDAIL----ASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKK.......................... 174
43 -10.700d1hwxa4 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  19  33........................GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAAIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGG................................................................................ 169
44 -10.700d2egga2 c.2.1.7 (A:123-297) Shikimate 5-dehydrogenase AroE {Geobacillus kaustophilus [TaxId: 1462]}  ali model 3D-neighbors follow..  18  16........................TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSV-GMHPRVEVQPLSLERLRPGVIVSDI...................................................................................... 117
45 -10.600d4qjia1 c.72.3.0 (A:186-412) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  13  4..............GVKALVTAGGTLDPVRFI--SSGKQGYAVARVLAQRGADVTLIAGNTAGLIDPAGVEMVHIGSATQLRDAVSKHAPDANVLVMAAAVADFRPAHVAAAKIKKGLPNMRAIVGFAAETGDANGDVLFHARAK---DHNDGWLLSADGTESALEHGSKTLMATRIVDSIAAFLKS.......................... 226
46 -10.500d3vpxa2 c.2.1.0 (A:145-363) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  16  21...................AFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINEEAVQRAVDAFGATAVGINEIYSQ------EADIFAPCALIAGSANNQLKETRHGDLIHEMGIVYDYVINSGGVINVA........................................................................... 151
47 -10.400d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  12  1.............................VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATL-------EKHPELNGVVFVIV------PDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGK.......................... 145
48 -10.400d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  14  1............................LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETS-------EEDVYSCPVVISAV-----TPGVALGAARRAGRHVRGIYVDINN-------SPETVRMASSLIEKGGFVDAAIMGSVRRKGADIRIIASGRDAEEFMKLNRYG......................... 142
49 -10.400d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}  ali model 3D-neighbors follow..  12  13..................LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQ................................................................................................................................... 76
50 -10.300d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  14  27..........................PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDKFMKEKVGGVHAAVVTAVSKPA-------QSAYNSIRRGGACVLVGLPPE................................................................................. 128
51 -10.300d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  1.........................MAVKKIAIFGAGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVARNIVAAMKAHGVVVACTS.................................................................................... 111
52 -10.300d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  16  1............................MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTDAGIEDADMYIAVT---GKEEVNLMSSLLAKSYGINKTIARIS..................................................................................... 99
53 -10.200d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  25  22...........................PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQG--------LKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG................................................................................ 119
54 -10.200d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  9  21..........................ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI------VTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV...................................................................................... 117
55 -10.200d3k96a1 c.2.1.0 (A:3-180) automated matches {Coxiella burnetii [TaxId: 227377]}  ali model 3D-neighbors follow..  10  5.............................PIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNPFPETLKAYCDLKASLEGVTDILIVV---PSFAFHEVITRMKPLIDAKTRIAWGT--KGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVNSQFSKDLIERLHGQRFRVYKND................. 178
56 -10.200d2hmta_ c.2.1.9 (A:) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  16  3.............................QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLIRNFEYVIVAI--GANIQASTLTTLLLKELDIPNIWVKAQNYYHHKV.............................................................................. 107
57 -10.100d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  25  22...........................PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKK................................................................................................................................... 76
58 -10.100d1lqua2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  1..........................RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG----------------------LVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSXRGVPTPGL................................................. 116
59 -10.100d2x5oa1 c.5.1.0 (A:1-93) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  18  1.......................ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMA----ADLIVASPGIALAHPSLSAAAD.................................................................................................... 86
60 -10.100d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  23...........................PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL------KLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL.................................................................................... 120
61 -10.000d1z82a1 c.2.1.0 (A:2-166) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  11  2............................MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATEEIKKEDILVIAI-------PVQYIREHLLRLPVKPSMV-LNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKTAVTLAGENSKELQKRISTEYFRVYTC.................. 165
62 -9.970d2dapa1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  10  1.........................MTNIRVAIVGYGNLGRSVEKLIAKQDMDLVGIFSRRATLDT---------KTPVFDVADVDKHADDVDVLFLCM---AQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGXRNPDFTASSQIA........................................................... 131
63 -9.920d3dk9a2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  22...........................PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENA................................................................................................................................... 76
64 -9.890d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  20...........................PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIE---AGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG................................................................................ 122
65 -9.860d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}  ali model 3D-neighbors follow..  20  21...........................PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKL................................................................................................................................... 75
66 -9.860d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  20  26...........................PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYR................................................................................................................................... 80
67 -9.810d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  12  1............................MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV---STDGVLPVMSRILPYLKDQYIVLISKIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVSESSANKMKEIFETEYFGVEVTT................. 180
68 -9.640d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  16  2ARSFGGSLVRPEATGYGSVYYV--TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVKVDIIMPCAYIEVANMPTTNEALRFLMQQPNMVVASKAVNAGG................................................................................ 182
69 -9.570d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  13  4.............................KVIVYGGGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASQVDGVFCVAIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAAAVHHLTSSLAAKDSGLPDNSAVLTI--MPVTLDTPMNRKISEHLLKWTTE----------TSSRPSSGALLKITTE.... 226
70 -9.560d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  7  141SNLXVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRD-GAIV............................................................................................................................................................... 193
71 -9.560d3ngxa2 c.2.1.0 (A:116-276) automated matches {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  21  32........................GYHENTVTIVNRSVVGRPLSMMLLNRNYTVSVCHSKT---------------------KDIGSMTRSSKIVVVAV------RPGFLNREMV---TPGSVVIDVGINY-GDANFEDLSEYVE-----------AITPVPGGVPITATNILENVV.................................... 151
72 -9.500d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  11  1............................MKIAVAGSGYVGL-SLGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYKATLDSKAAYKEAELVIIATPTNYQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTSPEFLRESKALYDNLY-PSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNN................. 189
73 -9.480d3fefa1 c.2.1.0 (A:7-171) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  18  1.........................LDQIKIAYIGGGSQGMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPM.................................................................. 147
74 -9.450d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  13  3.............................NVLIVGVGFMGGSFAKSLRRSGFKIYGYDINPESISKAVDLG-----IDEGTTSIAKVEDFSPDFVMLSSPVRTFRE---IAKKLSYILSEDATVTDQGSVKGKLVYDLEN......................................................................... 108
75 -9.440d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  17  1............................MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEATTDFKKAVLDSDVSIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL............................. 194
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.