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Query: PF01810.18; RHTC_ECOLI/13-206; LysE type translocator, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISRLast
1 -6.940d3d9da2 a.29.3.1 (A:261-433) automated matches {Fungus (Fusarium oxysporum) [TaxId: 5507]}  ali model 3D-neighbors follow..  15  1......PGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAGGSKHIIEHQSVADKLIRLETSRLLVWKAVTTLEDE-----ALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAV........................................................................... 117
2 -6.900d1q74a_ c.134.1.1 (A:) 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase MshD {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  5.LLFVHAHPD---TIAHYTSRGAQVHVVTCTGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAIILRPHVVVTY.......................................................................... 134
3 -6.170d3sdwa_ c.121.1.0 (A:) automated matches {Coccidioides immitis [TaxId: 246410]}  ali model 3D-neighbors follow..  9  49........PHVAIQAAQLIKDGKVDRALMICGTGLGVAI-SANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIGIELAKRLAGEWLTYRFDQKSASAQKVQAISDYEK................................................................................. 152
4 -6.120d2vvpa_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  14  45........PAFCIAAATRTVADPGSLGIVLGGSGNGEQI-AANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAQRHQRRIDILAEYER................................................................................. 148
5 -5.950d3k7pa_ c.121.1.0 (A:) automated matches {Trypanosoma cruzi [TaxId: 353153]}  ali model 3D-neighbors follow..  12  47........PDFASRVAEMVARKEVEFGVLAAGSGIGMSI-AANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREIIITFLQTPFSGEERHVRRIEKIRAIEASHA.............................................................................. 153
6 -5.930d4lflb_ c.121.1.0 (B:) automated matches {Lactobacillus rhamnosus [TaxId: 568704]}  ali model 3D-neighbors follow..  14  43........PIYGKKVAEDVADGRADLGIVMCGTGIGIST-AADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIVKAYLDATYKETPENKKLIDKIDNIAKPNP.............................................................................. 149
7 -5.660d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  22....FRPGD--TVRVSYKVKEGNRTRIQDFEGIVIRFTVRKVSYGVGVERIFPLHSPLIQKIDIV--AKLYFI......................................................................................................................... 102
8 -5.530d2gnxa1 a.246.3.1 (A:123-294) Hypothetical protein BC048403 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  40.........STLDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLWGQTFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKLKTMLLA-KFSFYFHEALSRQTTAS............................................................... 162
9 -5.520d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}  ali model 3D-neighbors follow..  5  25LANMVEAGEDPNFIFRRLLISACEDGLADPNAIVVVQSCCDAFDRVGFLFFLSQASLYLAISPKSNSTKSIFKAMEAIKATNVSLVPNHLKNNASNYLNPHNYQGKWLQQEYLPTDL............................................................................. 145
10 -5.510d1kvna_ d.201.1.1 (A:) SRP19 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  9  4..SVVWT---VNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWEEGGRVLMIELARKIAEIREQKREQKKDKKKKKK.................................................................................................. 104
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;