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Query: PF02405.16; K9WIJ8_9CYAN/42-253; Permease MlaE, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LLEQMATVGVGSLNPVILVAVFAGMIFTIQTARELSRFGAVNFVGGAFSLAFCRELAPILTASIVAGQVGSAYAAEIGAMQISEQIDALYMLKTDPINYLVIPRVVACFLMLPILTILALIMGIAGGVFVGMNFYNVPPDVFLNSVHELLEVRDLLNVVLKSLIFGVLIAIIGCSWGLTTKGGAKGVGQAATSAVVTSWISIFMFDFLISLALast
1 -6.030d3tnla1 c.58.1.0 (A:4-112) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  17  4...................................ERITGHTELIGLIATPIRHSLSPTMEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWN-VSMPNKTNIHKYLDKLSPAAELVGAVNTVV................................................................................... 98
2 -5.990d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato (Solanum tuberosum) [TaxId: 4113]}  ali model 3D-neighbors follow..  33  2...........................................................ICTNCCAGYKGCNYYSANGAFICEGQSDPKKPLNCDPIAYSKCPR............................................................................................................ 51
3 -5.580d3kx2a1 c.37.1.19 (A:1-270) Pre-mRNA splicing factor DEAH RNA helicase Prp43 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  17  111...............IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTI----LKYMTDGMLLREAMEDHDLSRYSCII--------------------LDEAHERTLATDILMGLLKQVV----LKIIIMSATLDAEKFQRYFNDAPLLAV................. 267
4 -5.550d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}  ali model 3D-neighbors follow..  16  20...........................................................VLQLTIRGLMNKQIAGELGIAEVTVKVNIMQKLNVRSLANLV............................................................................................................... 64
5 -5.510d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}  ali model 3D-neighbors follow..  5  1..........................MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRS-MFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQV---QLISFIAYKP................................................................................................... 119
6 -5.490d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  8.....................................................EEKELFEQGLAKFGRRWTKISKLIGSRTVLQ................................................................................................................................ 38
7 -5.270d4enea_ f.20.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  18  111................VLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFR-TLLATGAAAGLAAAFNAPLGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYLWLYLILGIIFGIFGPIFNKWVL-------GMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTL 329
8 -5.240d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}  ali model 3D-neighbors follow..  9  2............................MQDYKQSLKYETFSYLPPMNAERIRAQIKYAIAQ-FFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQS---LGLAFVVYRG................................................................................................... 107
9 -5.210d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  59...............TVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAVELQRVCAYVDSVELATGKQVRLTA............................................................................................................ 149
10 -5.190d4f0hb_ d.73.1.1 (B:) automated matches {Red algae (Galdieria sulphuraria) [TaxId: 130081]}  ali model 3D-neighbors follow..  7  3...................................ITQGTFSFLPDLTDEQIKKQIDYMISK-LFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERG-IESTIISFIVNRP................................................................................................... 103
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.