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Query: PF02424.15; C5BM31_TERTT/32-314; ApbE family, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGTEVSITFWHDDPAQAQQLLADGMAEMRRLDRELSPWIESSELATLNRLAAKAPQKISSEMLFLVDKSLYFSHLTHGAFDITFASVGWFYDYREKKQPSEAQRSALLPAINYRWLKLDKTAGTLAYAHDNVRIDLGGIAKGYAVDRVAQLLENAGVRNATISAGGDSQIVGDKRGKPWIIGIKNPRDGGKEEAEAAILLPLENTAISTSGDYERYFIDQKTGERVHHIINPRTGKSVEGVVSVTILGPRGSDTDPMSTSVFVLGVEKGLALVNSLANFECIILast
1 -90.400d1vrma1 d.96.2.1 (A:44-352) Hypothetical protein TM1553 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  30  10LGTSVRIVVSSQKI-NPRTIAEAILEDMKRITYKFSFTDERSVVKKINDHPN-EWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNRVPSREEIEEALKHTGYKNVLFDDKNMRVMV-KNGVKIDLGGIAKGYALDRARQILSFDENATGFVEAGGDVRIIGKFGKYPWVIGVKDPRG-----DDVIDYIYLKSGAVATSGDYERYF--VVDGVRYHHILDPSTGYPARGVWSVTIIAEDATTADALSTAGFVMAGKDWRKVVLDFPNMGAHL 288
2 -25.200d2o34a1 d.96.2.2 (A:2-248) Hypothetical protein DVU1097 {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  13  86..........................................................................................................................RRMAHGARLVGVGPFAAVAGTIAQMVAERFVDVS-PELIVENGGDLYLYS---ERDRVVGILPDPASGDMVGILVRAGTAPVSLCGSSA-------------RIGHSLS------LGDGDLAVVRARDASLADAAATAFMLRRADDVAAVTERAAQLA... 222
3 -7.210d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  11  1..................................................................................................................................GFERTFGAFPPWL-------------LERYLEEWGGTREGEGVYRLPGAVVRFRE------VEPLKVGSLSIPQLRVEVEGEEAERWFER............................................................... 71
4 -6.240d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}  ali model 3D-neighbors follow..  11  1..............................................................................................................................RRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV-------GGVWY---RYPGARCDIESIEYCY----SEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYL.......... 137
5 -5.880d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  9.............................................................................................................................................................SRYLAQIGDSVSLTCSTTGCEWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYL..................................................................... 70
6 -5.760d3u43b_ d.4.1.1 (B:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  4......................................................................................................................................NKPGKATGKGKPVGDKWLDDAGIPDRIADKDKEFKNFDDFRKKFWEEVSKDP--------DLSKQFKGSNKTNIQKGKAPFARKKDQVGGRLHHDKPISQDGGVYDMNNIRVTTPKR................................ 124
7 -5.680d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  12.......................................................................................................................................VSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNV---------DAGTMRPYEHGE-----VFVTADGAETDLDIGHYERFLDMDLSGQVYLSVIQKERSQTVQVIPHITIKERIRKVAEEQKAEIVVVEVGGTVGDIESLPFLEAI. 158
8 -5.480d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]}  ali model 3D-neighbors follow..  10  54.....ELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEI--------DMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKV-----IGEIAQMHKEAGQPIKTWHFGGDEAKNIKAKPEPGKGIIDQGNEDKPWAKSQVCQTMIKEGKVADMEHLPSYFGQEVSKLVKAHGIDRMQAWQLKDAESSKAFATSRVGVNFWDTLYW--GFDSVNDWANK........ 319
9 -5.460d5eiqa2 b.1.1.0 (A:100-190) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  13..............................................................................................................................................................GPVVGPGANVSLRGRLRNMSFVLYREGVAAPLQYRHSAQPWADFTLLGARAPGTYSCYYHTPSAPYVLSQRSEV................................................... 88
10 -5.330d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  15  12......................................................................................................................................TAIDIAYDIFLEMAGENLDPADILLFNLQFEERGGVEFVETADDWEEEIGVLIDPEE----AEVWVGLVNEQDEMDDVFAKFLISHREEDREFHVI..................................................... 104
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.