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Query: PF03224.14; VATH_ORYSJ/2-323; V-ATPase subunit H, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DHAELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNILRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLRLLLKGNWFVQEKSCKILTQIISARPKMQNGIVPNGEASNSKSKLTSTQDVLRGLVDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSIQLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAKGAFAAQMIDLGLPHIVQNLKAQAWTDEDLLDALNQLEIGLLast
1 -50.100d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  10THFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINI-------------------LQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEIL 345
2 -23.100d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  4..IPKAVQYLSSQDEK---------YQAIGAYYIQHTCFQDESAKQQVYQLGG---ICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLETR-----RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSN-----MSREVVDPEVFFNATGCLRNLSADAGRQTMRNYSGLIDSLMAYVQNCVAASDDKSVENCMCVLHNLSYNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGSQLIGLKEKGLPQIARLLQS--GNSDVVRSGASLLSNM 358
3 -21.800d4ev8a_ a.118.1.1 (A:) beta-Catenin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  135.........................FLAITTDCLQILAYGNQESKLIILASGG---PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV------EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSCPANHAPLREQGAIPRLVQLLVRAHQDRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR--NEGVATYAAAVLFRM 504
4 -21.500d4r10a_ a.118.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  8  14.....................HDESVVARAVHRAYMLSREDPNFFNAPGFDHRSFV-EALMAASKS-SNVNVRRNAIGALSHMSEQRGGPLLIF------RSGGLAEIIRMLYDSLESVVHYAVTTLRNLLMHVSDSRAQVADGLYFLLIDDAPSKITFLSLLGPQILVSILREYSDHRKLIYTVVRCIRSLSVCPSNKPALISLGCLPALYVELC---TAKDERSQTAILVAMRNLSDSAT--NEENLTQLIIKLLEIIR-VANDGMTACACGTLSNLTNNTRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHC 325
5 -21.300d3l6xa_ a.118.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  67.........................VHLGACGALKNISFGRDQDNKIAIKNCDG--VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI-------VDHALHALTDEVIIPHSGWEREPNEQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE-SKTPAILEASAGAIQNLCYGRYIRSALRQEKALSAIADLL----TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNEDTVISILNTINEVIANLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 435
6 -20.700d4b8ja_ a.118.1.0 (A:) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  13  108.........................LQFEAAWALTNIASGTSENTKVVIDHG---AVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVL-----ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ------------------TRPALPALARLIH--SNDEEVLTDACWALSYLSDTNDKIQAVIEAGVCPRLVELL----LHPSPSVLIPALRTVGNIV-DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITANKDQIQAVINAGIIGPLVNLLQT--AEFDIKKEAAWAISNA 372
7 -20.200d1xqra1 a.118.1.21 (A:84-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3..........................QRGEVEQMKSCLRVLSQPMPPTAGE------------AEQAADQQEREGALELLADLCENMDNAADFC-----QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG------------------LGALRKLLRLLDR-DACDTVRVKALFAISCLVRQEAGLLQFLRLDGFSVLMRAM----QQQVQKLKVKSAFLLQNLL-HPEHKGTLCSMGMVQQLVALVRTEHSP-FHEHVLGALCSLVTDFPQGVRECREGLEELLRHRCQLLQQHEEYQEELEFCEKLL 262
8 -10.600d4adya1 a.118.1.28 (A:309-753) Proteasome regulatory subunit Rpn2, PC domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  6  11SSLDGKFSLFHTAVSVANGFMHAGTTDNSFIANLPWLGKAQNWAKFTATASNLLEGKKVMAPYLPGSRASSLKNIIVENSGTSGDEDVDVLL-LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE--AIHDMFTYSQETQHGNITRGLAVGLALILITKMLASDESLLRYGGAFTIALA----------AGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKD--PVDFVRQAAMIALSMI 355
9 -10.400d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  1...................YQKRK--ASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILCKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAIIPLLINLL--KDPNGDVRNWAAFAININKYDNS------------DIRDCFVEMLQDKNEEVRIEAIIGL----------SYRKDKRVLSVLCDELKK---NTVYDDIIEAAGELGDKT----------LLPVLDTMLYKFDDNEIITSAIDKLKRS. 276
10 -9.800d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  1......................AAADGDDSLYPIAVLIDELRNEDVQL----RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSDDTPMVRRAAASKLGEFAKVLELDNV------KSEIIPMFSNLASDEQDSVRLLAVEACVNIA-QEDLEALVVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332
11 -9.330d3ea5b_ a.118.1.1 (B:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  9  7......................AQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENKLEGRILAALTLKNELVSKDSVKT--QVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----------------------PELMKIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGASTETSKAVRLAALNALADSLIKNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST.. 292
12 -9.310d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  10.......................EKMTSSDKDFTNDLMTELQKDSIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKEYQ----------ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL-------------AANVCKKITGRLTSAI-AKQEDVSVQLEALDIMADMLSR---------VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV---MSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV--DDDELREYCIQAFESF 279
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;