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Query: PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst VIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQLast
1 -11.200d3kkra1 c.55.3.0 (A:60-208) automated matches {Bovine immunodeficiency virus [TaxId: 417296]}  ali model 3D-neighbors follow..  15  1.........LWQMDNTHWNKTIIWVAVETNSGLVEAQVIEETALQVALCILQLIQRYTVLHLHSDNGPCFTAHRIENLCKYLGITKTTVERAHRDLKDRLAAYQGDCETVEAALSLALVSLN......... 125
2 -9.670d3l3ua_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}  ali model 3D-neighbors follow..  15  3........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACDWAGIKQEDIESMNKELKKIIGQVRDQAEHLKTAVQM............... 122
3 -7.500d1cz9a_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}  ali model 3D-neighbors follow..  14  1........QIWQTEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAV--KAIKTDNGSCFTSKSTRE----NSQGQAMVERANRLLKDKIRVLAEGDGFMKR................... 121
4 -7.060d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  21  169.......DHVWTEVYSPSQQRWL--HCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLRETINGLNKQRQLSLSESRRKELLQRIIVELVE............. 277
5 -6.460d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage Mu [TaxId: 10677]}  ali model 3D-neighbors follow..  7  15.....LHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDENIDSIRLSFMDVVTRYGIFHITIDNTRGAANKWLTGVAGKGWGQAKPVERAFGVGGLE-PNPQAKPDNYGDRAELFLKTLAEGVAMFNAR 193
6 -5.860d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  21  80.........................................................................LPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGS-----KVLVRFIEAEKF. 131
7 -5.720d5cz1a1 c.55.3.2 (A:54-212) automated matches {Mouse mammary tumor virus [TaxId: 11757]}  ali model 3D-neighbors follow..  19  6.......RVLWTHVSEFGKLKYVHVTVDTYSHFTFATARGEATKDVLQHLAQSFAYMGIQKIKTDNAPAYVSRSIQESHVTGPQGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVL........ 138
8 -5.480d2dzda3 b.84.2.0 (A:340-461) automated matches {Geobacillus thermodenitrificans [TaxId: 33940]}  ali model 3D-neighbors follow..  15  37....VRLDAGNGFQGAVITPYY-----DSLLVKLSTW--ALTFEQAARKMLRNLREFRIRGIKTN--PFLENVVQHPKFLSGEYDTSFIDTTPELF................................... 120
9 -5.470d1ry9a_ d.198.1.1 (A:) Surface presentation of antigens protein SpaK (Spa15) {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  9  32.AITISLDSM--NIALVNEQVMLWANFDAPSDVKLQ----SSAYNILNLMLMNFSYSLVELHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEILNGVL............................ 133
10 -5.390d2fm8a1 d.198.1.1 (A:1-134) Surface presentation of antigens protein SpaK (Spa15) {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  8  32.TIVLDLFALPSCISVKDDDVWIWAQLGADSMVVLQ----QRAYEILMTIMEGCHFAQLLLGEQNGELTLKALVHPDFLSDGEKFSTALNGFYNYLEVFSRSL............................ 133
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;