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Query: PF03992.16; HMOB_BACSU/65-140; Antibiotic biosynthesis monooxygenase, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst GFAVLNNIAVTQEGRPLFENRFKNRAGKVENEPGFEAIRVLRPLDSDTYVILTLWETESAFQDWQQSGSYKEAHKKLast
1 -40.600d1iuja_ d.58.4.5 (A:) Hypothetical protein TT1380 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  44  2.FVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKPGDPYVVMTLWESEEAFRAWTESPAFKEGHAR 77
2 -38.500d3hx9a_ d.58.4.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  34  2.VVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVGEERYFVVTHWESDEAFQAWANGPAIAAHAGH 77
3 -37.200d2zdpa2 d.58.4.5 (A:1-108) Hypothetical protein PG130 (SAV0165) {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  36  2.FMAENRLQLQKGSAEETIERFYNR-QGIETIEGFQQMFVTKTLDTDEVKILTIWESEDSFNNWLNSDVFKEAHKN 78
4 -34.000d1tz0a_ d.58.4.5 (A:) Hypothetical protein BC2969 {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  24  4.FIETKTFTVKEGTSNIVVERFTGE-GIIEKFEGFIDLSVLVKKGDEEVVVMIRWESEEAWKNWETSEEHLAGHRA 80
5 -33.100d1y0ha_ d.58.4.11 (A:) Hypothetical protein Rv0793 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  13  6.VAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYESADGGELVLFERYRSRIALDEHRGSPHYLNYRAQ 80
6 -31.900d2bbea_ d.58.4.0 (A:) automated matches {Shewanella oneidensis [TaxId: 211586]}  ali model 3D-neighbors follow..  5  9.IVCVASFLSKEGKTEALIAALASLIPDTRREAGCIRYELNVSDEPRRVTFVEKFVDIAAFDEHCAKDAIQHYFHQ 84
7 -31.300d4dpoa1 d.58.4.0 (A:3-96) automated matches {Methanosarcina mazei [TaxId: 192952]}  ali model 3D-neighbors follow..  21  1AIRVVAKNQVKPEKVQEFMNLCKSLIEETLKEEGCIDYGVYQELNPEILTMLEEWKDEGSLDQHIRSDHFKEIFPL 77
8 -31.300d1x7va1 d.58.4.11 (A:1-97) Hypothetical protein PA3566 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  5.LTLIATITAAPGHAEALERELRALVAPSRAEAGCLQYDLHQDHDSHLFYMIEQWRDDAALERHQNTEHFLRFSRG 80
9 -31.000d3qmqa1 d.58.4.0 (A:1-96) automated matches {Escherichia coli [TaxId: 511145]}  ali model 3D-neighbors follow..  20  2.HVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDEVNSRFYIYEAYKDEDAVAFHKTTPHYKTCVAK 77
10 -29.300d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512 {Nitrosomonas europaea [TaxId: 915]}  ali model 3D-neighbors follow..  10  4.LALFVRLEAKPGQEAALADFLASALPLANAESGTTAWFALKF-GPSTFGVFDAFADEAGRQAHLNGQIAAALMAN 77
11 -29.300d1lq9a_ d.58.4.3 (A:) Actinorhodin biosynthesis monooxygenase ActVa-Orf6 {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  14  11.VAVVTFPVDGPATQHKLVELAGGVQEWIREVPGFLSATYHASTDGTAVVNYAQWESEQAYRVNFGADPRSAELRE 86
12 -28.800d1tuva_ d.58.4.11 (A:) Hypothetical protein YgiN {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  2.LTVIAEIRTRPGQHQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEA 87
13 -27.700d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  3.HYITACLKIISDKDNEIMKEFKKLEEETNKEEGCITFHAYPLPSERKIMLWEIWENEEAVKIHFTKKHTIDVQKQ 79
14 -19.900d2yava_ d.58.4.17 (A:) automated matches {Acidianus ambivalens [TaxId: 2283]}  ali model 3D-neighbors follow..  10  159.VVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGFGAKGFHQVLENPGSLEPDPNNVMYSV. 237
15 -19.700d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  11.YYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVRE-ADGRGITVSYWDSMDAINHWRHHTEHQAAKEK 84
16 -18.200d2hiqa_ d.58.4.12 (A:) Hypothetical protein YdhR {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1ATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEK......... 67
17 -12.600d2pgca1 d.58.4.23 (A:1-206) Uncharacterized protein GOS_2596953 {Environmental samples [TaxId: 33858]}  ali model 3D-neighbors follow..  11  5NYVILTVASVDFSYRETMARLMSSYSKDLIDNAGAKGTRIGTGDHAGSLIFIQFYDDQKALEIQSKSSVFKEIMDS 87
18 -9.510d3hf5a1 d.58.4.19 (A:1-107) automated matches {Pseudomonas reinekei [TaxId: 395598]}  ali model 3D-neighbors follow..  13  2.IRILYLLVKPESSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPT-IGECWFASEEQYQVYMESDIRKAWFE. 89
19 -9.260d3bgua1 d.58.4.0 (A:1-97) automated matches {Thermobifida fusca [TaxId: 269800]}  ali model 3D-neighbors follow..  10  3.IRHIALFRWNDTVTPDQVEQVITALSKLPAAPELKNYAFGADLGLADFAVVADLDGEDGFRAYQDHPDHRAALA. 81
20 -9.210d1vqsa1 d.58.4.13 (A:1-104) Hypothetical protein Atu4242 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  8  2.FYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWDRAERRARLMADPRWLSFLPK 82
21 -9.120d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}  ali model 3D-neighbors follow..  14  5.VKLIALYEQPEDKQAFDEHYFNTHAPLTRKIPGLRDMKVTRIVGSPM-MCEMYYDDHESLQQAMRTDEGKASGK. 84
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.