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Query: PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH), from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVLast
1 -68.100d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  5..........TLDNNVLTLEQRKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPGKKTSRHPLHQDLHYFP------------RPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRK. 234
2 -65.900d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}  ali model 3D-neighbors follow..  12  1............KKFALTAEQRASFEKNGFIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIA-------NYDRHLDDDFLASHICRPEICDRVESILGPNVLCWRTEFFPKPGDEGTDWHQADTFANASGKPQIIWPENE---EFGGTITVWTAFTDANIANGCLQFIPGTQNSMNYDETKRMTYEPKPDEASAVPMQMKAGQFIIFWSTLMHASYPHSGESQEM. 245
3 -31.300d2dbna_ b.82.2.12 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  58DAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYP---IYWSQAQMQARQSEEMANAQSFLNRVSVIYPDRIRRRPPGTTSKGLQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEA-PGRVLPVSEQWHPLLIEALTSIPKLEAGDSVWWHCDVIHSVAPVENQQGWGN 358
4 -19.300d4j25a1 b.82.2.0 (A:2-206) automated matches {Pseudomonas putida [TaxId: 160488]}  ali model 3D-neighbors follow..  10  3...........SPEHPMLAAVVDDLATHGWSQQAHFLPADLVRALAAECRRRDAEGELNPAGVGRGATQEVRETIRGDQIQWIDPGQAEACDQYLAAMDQLRLAINQGLFLGLEDFECHFALYPPGAFYRRHLDR-----------------FRDDDRRMVSAVLYLNE-PHDGGQLRMFL--------------------ADGVEHDVEPVAGCLVVFLSEVPHEVLP--AGRER.. 191
5 -15.200d3ouia_ b.82.2.15 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  4..............KLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSDDLIRHCNGKLGSYKINGRTKAMVPGNGTGYVRHVD------------------NPNGDGRCVTCIYYLNK-AKVSGGILRI------------------FPEGKAQFADIEPKFDRLLFFDRRNPHEVQPAYATR.... 195
6 -13.600d2jiga_ b.82.2.15 (A:) P4H-1 {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  12  16.............................AFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTW------AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHD-----GQKYEPHYDY----------HDPVNAGPEHGGQRVVTMLMYLTTV--EEGGETVLPNAEQ-------KVTGDGWSECAKRGLAVKPIKGDALMFDPASLHGSCP......... 196
7 -13.100d4p7xa1 b.82.2.0 (A:2-280) automated matches {Rhizobium loti [TaxId: 266835]}  ali model 3D-neighbors follow..  10  1...........................TTRILGVVQLDQRRLTDDLAVLAKSNFSSEYSDFACGRWEFNQSGKQEEQRVVVHETPALATPLGQSL---PYLNELLDNHFDRDSIRYARIIRISENACIIP-HRDYLELEGK------------------FIRVHLVL---DTNEKCSNTEENN------------------------IFHMGRGEIWFLDASLPHSA--CFSPTPR.. 163
8 -12.900d1e5sa_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}  ali model 3D-neighbors follow..  11  2...........................RSHILGKIELDQTRLAPDLAYLAAVPTVEEEYDEFSNGFWNASGDSEDRLYRDLKDAAAQPTAHVEHV---PYLKEIVTTVFDGT-HLQMARSRNLKNAIVIP-HRDFVELDREVDR---------------YFRTFMVL---EDSPLAFHSNEDT------------------------VIHMRPGEIWFLDAATVHSA--NFSEISR.. 168
9 -12.000d2r6sa_ b.82.2.3 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  49LRFRVGKILDDLCANQLQPKTLLNRAEGALLINAVGIDDVAQADEMVKLATAV---------------------------------------AHLIGRSNFDAMSGQYYAVVKNVDNSDSYLRQPHRVMELHNDGTYVEEITD-----------------YVLMMKIDEQNMQGGNSLLLHLDDWEHLDHYFRHPLARRPMTSKGILSVPVPVGKFLLINNFWLHGRDRPHPDLRREL 293
10 -11.600d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  4............DREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFN-SLLCNLYRNEKDSVDWHSDDE-------------------------------PSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQHRVPKEYHSREPRV 201
11 -11.100d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]}  ali model 3D-neighbors follow..  32DAAHTAAASLPGALATALDTFNAEGSEDGHLLLRGL----PVEADADLPTTPSSTPAPEDRSLLTMEAMLGLVGRRLGLHTGYRELRSGTVYHDVYPSP----------------GAHHLSSETSETLLEFHTEMAYHRLQPN-----------------YVMLACSRADHERTAATLVASVRKALPLLDERTRAAALSKALDEVTEAVYLEPGDLLIVDNRTTHARTPRWDGKDRWL 294
12 -10.100d4jhta_ b.82.2.10 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  13  3..........................AAGAVILRRFAFNAAEQLIRDDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC-PDFQPDACLINRYAPGAKLSLHQDKD--------------EPDLRAPIVSVSL-----------GLPAIFQFGGL---------------KRNDPLKRLLLEHGDVVVWGGESYHGIDCRYNLTFRQA 199
13 -9.760d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  10...............TMSEFLEEYWPVKPLVAFTSIPGFEKVRTLENVL-PVMVVGDAVIEESEGITDRFLVSPAEALEWYEKGAALEFDFTDLFI--PQVRRWIEKL--PAGTSSKAIVYAAKNGGGFKAHFDAY---------------------------NLIFQ-----------IQGEKTWKLAKNENVSNPMQHYDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQAT..... 225
14 -9.010d4uxaa_ b.82.1.0 (A:) automated matches {Granulicella tundricola [TaxId: 940615]}  ali model 3D-neighbors follow..  22  42................................................................................................................................................................................TTFEPGAHTHPLGQTLIVTAGCGWAQREGGAVEEIHPGDVVWFSPGEKHWHGAAPTTAMTHL 107

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.