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Query: PF07476.11; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFQGEKLREYVRWLSDRILSLRTSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRLLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLVKPGMGFDEGLNIVFNEMNRTIALLQLast
1 -98.100d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}  ali model 3D-neighbors follow..  98  2CVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQ 250
2 -62.300d3r1za2 c.1.11.0 (A:128-357) automated matches {Francisella philomiragia [TaxId: 484022]}  ali model 3D-neighbors follow..  17  2..ANSIVTDVSIS----CGNVAETIQNIQNGVEANFTAIKVKTGAD-------FNRDIQLLKALDNEFSKNIKFRFDAN------QGWNLAQTKQFIEEINKYSL-NVEIIEQPVKYYDIKAMAEI---------TKFSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMV-GCMMESPAGILATASFALA................................. 187
3 -61.600d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  15  2..RDTLETDYTVS----VNSPEEMAADAENYLKQGFQTLKIKVGKD------DIATDIARIQEIRKRVGSAVKLRLDAN------QGWRPKEAVTAIRKMEDAG-LGIELVEQPVHKDDLAGLKKV---------TDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMV-GSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVF............. 208
4 -61.400d3q4da2 c.1.11.0 (A:125-368) automated matches {Cytophaga hutchinsonii [TaxId: 269798]}  ali model 3D-neighbors follow..  16  2.KDKIIQTDYTVS----IDEPHKMAADAVQIKKNGFEIIKVKVGGS-------KELDVERIRMIREAAGDSITLRIDAN------QGWSVETAIETLTLLEPYN---IQHCEEPVSRNLYTALPKI---------RQACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQV-GGFLESRLGFTAAAHVALVSKTICYYDFDTPLMFEADPVRGGIVYQQRGIIE 219
5 -60.900d3rita2 c.1.11.0 (A:126-354) automated matches {Methylococcus capsulatus [TaxId: 414]}  ali model 3D-neighbors follow..  18  1.AHDSLPTSVTIG----IKPVEETLAEAREHLALGFRVLKVKLCGD-------EEQDFERLRRLHETLAGRAVVRVDPN------QSYDRDGLLRLDRLVQELG---IEFIEQPFPAGRTDWLRAL---------PKAIRRRIAADESLLGPADAFALAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMW-GCMDESRISIAAALHAALACPATRYLDLDGSFDLARDVA............. 206
6 -60.400d4m0xa2 c.1.11.0 (A:130-371) automated matches {Rhodococcus opacus [TaxId: 37919]}  ali model 3D-neighbors follow..  15  1LRRKRIPITWAFSAGS----ASDLIDEAAQKLDVGHRSFKFKMGAEP------ADTDSRRVLDVLECIPDECAVIVDPNG------RWSELEAHRWLPILADAG---VTVAEQPIARWNTDGLARL---------RDKLSIPIMADESVTTVQQAIALADAGAVSAFAIKIPKSGGLSRAREIAAIAEASGLACFG-AATPESSVMGAISAQLYGTMPDLSVGCELFGPGLLIDEVVTEPLK....... 213
7 -59.900d3dgba2 c.1.11.0 (A:133-374) automated matches {Pseudomonas fluorescens [TaxId: 220664]}  ali model 3D-neighbors follow..  17  2.VRDALPVAWTLA---SGDTAKDIAEAQKMLDLRRHRIFKLKIGAG------EVDRDLAHVIAIKKALGDSASVRVDVNQ------AWDEAVALRACRILGGNG---IDLIEQPISRNNRAGMVRL---------NASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYG-GTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPV....... 214
8 -59.800d3i4ka2 c.1.11.0 (A:133-374) automated matches {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  14  1TVRDKVDVTWALG---VLPLDVAVAEIEERIEEFGNRSFKLKMGAG------DPAEDTRRVAELAREVGDRVSLRIDINA------RWDRRTALHYLPILAEAG---VELFEQPTPADDLETLREI---------TRRTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHG-ATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLKDTYIVQEFE....... 214
9 -58.700d2ps2a2 c.1.11.0 (A:131-370) automated matches {Aspergillus oryzae [TaxId: 510516]}  ali model 3D-neighbors follow..  12  2.TNTRLPLISSIY----VGEPEDMRARVAKYRAKGYKGQSVKISGE-------PVTDAKRITAALANQQPDEFFIVDANG------KLSVETALRLLRLLPHGL---DFALEAPCATWR-----------ECISLRRKTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSV-QETCGSDIAFAAIVHLAQTIPERSLRCILECRDMVTVKTADGAFDIQDGFAT 217
10 -58.600d2pgwa2 c.1.11.0 (A:132-374) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  16  1AHRKAVGYFYFLQGET----AEELARDAAVGHAQGERVFYLKVGRG-------EKLDLEITAAVRGEIG-DARLRLDANE------GWSVHDAINMCRKLEKYD---IEFIEQPTVSWSIPAMAHV---------REKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICI-HSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLD 218
11 -58.200d2zada2 c.1.11.0 (A:125-345) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  15  1.KRDEIETDKTVG----IDTVENRVKEAKKIFEEGFRVIKIKVGEN-------LKEDIEAVEEIAKV-TRGAKYIVDAN------MGYTQKEAVEFARAVYQKG-IDIAVYEQPVRREDIEGLKFV---------RFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGLKLMI-GCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVF............. 205
12 -58.100d3fvda2 c.1.11.0 (A:128-368) automated matches {Roseovarius nubinhibens [TaxId: 89187]}  ali model 3D-neighbors follow..  15  2.AATPVPINSSIS----TGTPDQMLGLIAEAAAQGYRTHSAKIGGS------DPAQDIARIEAISAGLPDGHRVTFDVNR------AWTPAIAVEVLNSVRARD-----WIEQPCQTLDQCAH-----------VARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHI-EDVGGTALADTAALHLAASTPEANRLA......................... 191
13 -57.700d3i6ea2 c.1.11.0 (A:133-375) automated matches {Ruegeria pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  18  2.CRDTIPLSCSIA----NPDFDADIALMERLRADGVGLIKLKTGFR------DHAFDIMRLELIARDFP-EFRVRVDYNQ------GLEIDEAVPRVLDVAQFQ---PDFIEQPVRAHHFELMARL---------RGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYG-GDMFEAGLAHLAGTHMIAATPEITLGEFYQASYFLNEDILETPFR....... 213
14 -57.600d4mgga2 c.1.11.0 (A:128-367) automated matches {Labrenzia aggregata [TaxId: 384765]}  ali model 3D-neighbors follow..  12  1AAQDDVALYRAIS----QEAPEIMAKKIEGYAAEGYTKFQLKVGGD-------ANDDINRIHATRSVLKKSDLLVADANT------GWTRHEAARVVGAVSSLD---VYIEQPCLTYEESVS------------IRRRTALPFVLDEVIDGPNTLVRGIAEDAMDCINLKISKVGGLTKAKLMRDLCIAHGIPMTI-EDTWGGDIVTAAIAHLARSTPSEFTFSATDFNSYGTVDIAEGAPKRVNGRMT 216
15 -57.100d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  13  2..KEQVEVGVSLG----QADEQATVDLVRRHVEQGYRRIKLKIKPG---------WDVQPVRATREAFP-DIRLTVDANS------AYTLADAGR----LRQLDEYDLTYIEQPLAWDDLVDHAEL---------ARRIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWC-GGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMP 215
16 -57.100d3ik4a2 c.1.11.0 (A:127-355) automated matches {Herpetosiphon aurantiacus [TaxId: 316274]}  ali model 3D-neighbors follow..  13  1.VSKQLETDMTIT----AGDEVHAAASAKAILARGIKSIKVKTAG------VDVAYDLARLRAIHQAAP-TAPLIVDGN------CGYDVERALAFCAACKA-ESIPMVLFEQPLPREDWAGMAQV---------TAQSGFAVAADESARSAHDVLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAGLGLMI-GGMVESILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPF............. 206
17 -56.700d2p8ba2 c.1.11.0 (A:126-369) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  18  2.YHEEFPVTHVLS----IADPENMAEEAASMIQKGYQSFKMKVGTN-------VKEDVKRIEAVRERVGNDIAIRVDVNQGWK-----NSANTLTALRSLGHLN---IDWIEQPVIADDIDAMAHI---------RSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQV-GSMVESSVASSAGFHVAFSKKIITSVELTG...................... 198
18 -55.900d4j1oa2 c.1.11.0 (A:127-369) automated matches {Paracoccus denitrificans [TaxId: 318586]}  ali model 3D-neighbors follow..  13  1VAAERVPSYYATG----IGQPDEIARIAAEKVAEGFPRLQIKIGGRP------VEIDIETVRKVWERIGTGTRLAVDGNR------SLPSRDALRLSRECPEIP----FVLEQPC--NTLEEIAAI---------RGRVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSC-DDAWGGDIIAAACTHIGATVQPRLNEG......................... 193
19 -55.700d3dg6a2 c.1.11.0 (A:125-366) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  15  2..TDRMRVSHMLG----DDPVKMVAEAERIRETYGINTFKVKVGRRP------VQLDTAVVRALRERFGDAIELYVDGNR------GWSAAESLRAMREMADLD---LLFAEELCPADDVLSRRRL---------VGQLDMPFIADESVPTPADVTREVLGGSATAISIKTAR-TGFTGSTRVHHLAEGLGLDMVM-GNQIDGQIGTACTVSFGTAFERTSRHAGELSNLDMSDDLLTVPLQISDGQLH 220
20 -55.500d3gd6a2 c.1.11.0 (A:123-374) automated matches {Oceanobacillus iheyensis [TaxId: 221109]}  ali model 3D-neighbors follow..  12  2.VKEKIKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGKN-------LDADEEFLSRVKEEFGSRVRIKYDFSH------LLNWKDAHRAIKRLTKYDL-GLEMIESPAPRNDFDGLYQLRLK-----------TDYPISEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVL-GTTQELSVGTAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKDGYLY 224
21 -54.800d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  2.LPETVITAQTVV----IGTPDQMANSASTLWQAGAKLLKVKLDNH---------LISERMVAIRTAV-PDATLIVDAN------ESWRAEGLAARCQLLADLG---VAMLEQPLPAQDDAALENFIHPL-----------PICADESCHTRSNLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFSLML-GCMLCTSRAISAALPLVPQVS............................... 181
22 -53.500d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  1..QAANYRAAPLCNGDPDDLILKLAD------MPGEKVAKVRVGLY------EAVRDGMVVNLLLEAI-PDLHLRLDANR------AWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRD-----------DSRAFARETGIAIAWDESLREPDFA--FVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVI-SSSIESSLGLTQLARIAAWLTPDTIPGLDTLDL-MQAQQVRRWPGSTLPVVE 213
23 -51.400d4dyea2 c.1.11.0 (A:121-375) automated matches {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  12  1AVRDEVPITALITRADAPGAKAMAEHAVRVVEEGGFDAVKLKGTTD-------CAGDVAILRAVREALP-GVNLRVDPNA------AWSVPDSVRAGIALEELD---LEYLEDPCV--GIEGMAQV---------KAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNL-HSGGELGIATAAHLAVVSSTPV.............................. 196
24 -50.300d3ozya2 c.1.11.0 (A:133-387) automated matches {Bordetella bronchiseptica [TaxId: 518]}  ali model 3D-neighbors follow..  11  4..TRGVRAYA--SSIYWDLTPDQAADELAGWVEQGFTAAKLKVGRA-------PRKDAANLRAMRQRVGADVEILVDANQ------SLGRHDALAMLRILDEAG---CYWFEEPLSIDDIEGHRILRA--------QGTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLA--WNPHTFNDIITVAANLHLVAASPHPAMFEWDITHNDLMTRLASYDLKLENGLVQ 222
25 -50.100d3vc5a2 c.1.11.0 (A:134-419) automated matches {Thermobispora bispora [TaxId: 469371]}  ali model 3D-neighbors follow..  12  3.VRDAVPYSAYLFYKWAGDPDGIVAQARLLIGEYGFRSIKLKGGVFP------PEQEAEAIQALRDAFP-GLPLRLDPNA------AWTVETSIRVGRALDG----VLEYLEDPTP--GIDGMARV---------AAEVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRSAHIATLCATFGIELSM-HSNSHLGISLAAMTHLAAATPAITHADTHTPWQDGQDVVAPGALRFVDGAVP 235
26 -48.900d2hzga2 c.1.11.0 (A:129-393) automated matches {Rhodobacter sphaeroides [TaxId: 1063]}  ali model 3D-neighbors follow..  16  2.ASHGKRPYASLL---FGDTPQETLERARAARRDGFAAVKFGWGPIGR---GTVAADADQIMAAREGLGPDGDLMVDVGQIF----GEDVEAAAARLPTLDAAG---VLWLEEPFDAGALAAHAALAG--------RGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYV---HTFTSHLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHI........ 218
27 -48.600d3bjsa2 c.1.11.0 (A:166-410) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  13  1.SKRRIPAYAG-GIALGYQPKESLAEEAQEYIARGYKALKLRIGDA-------ARVDIERVRHVRKVLGDEVDILTDANT------AYTMADARRVLPVLAEIQ---AGWLEEPFACNDFASYREVAKITPL--------VPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIP--INAHSSATGLNHAATIHFLAATENAGYFE......................... 196
28 -48.500d4hcha2 c.1.11.2 (A:127-382) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  16  2..RDKVLAYGSIMLEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFH------WYSRTDALALGRGLEKLG---FDWIEEPMDEQSLSSYKWL---------SDNLDIPVVGPESAAGKHHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVHG-------NTAMNLHVVAATKNCRWYE......................... 203
29 -48.200d2ovla2 c.1.11.0 (A:130-362) automated matches {Streptomyces coelicolor [TaxId: 100226]}  ali model 3D-neighbors follow..  15  2..DPVVPVYA--GGIDLELPVADLKTQADRFLAGGFRAIKMKVGRPD------LKEDVDRVSALREHLGDSFPLMVDANM------KWTVDGAIRAARALAPFD---LHWIEEPTIPDDLVGNARI---------VRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLT-------SHGVHDLTVHALASVPHRTYME......................... 190
30 -47.500d3toya2 c.1.11.0 (A:133-360) automated matches {Bradyrhizobium sp. [TaxId: 114615]}  ali model 3D-neighbors follow..  18  1....PIPAYDSYG---VLDARDDERTLRTACDEHGFRAIKSKGGHG------DLATDEAMIKGLRALLGPDIALMLDFNQ------SLDPAEATRRIARLADYD---LTWIEEPVPQENLSGHAAV---------RERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMS-------SHILPEASAHVLPVTPTAHFLE......................... 186
31 -47.300d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}  ali model 3D-neighbors follow..  13  1....GYPAYTTSPGWLGYS-DEKLVRLAKEAVADGFRTIKLKVGAN-------VQDDIRRCRLARAAIGPDIAMAVDANQ------RWDVGPAIDWMRQLAEFD---IAWIEEPTSPDDVLGHAAIRQGI--------TPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYL 220
32 -47.300d4h83a2 c.1.11.0 (A:148-385) automated matches {Marine actinobacterium [TaxId: 312284]}  ali model 3D-neighbors follow..  13  2..RNELPMIAIGG---YGEPLGSIADEMHNYQELGLAGVKFKVGG------LSAAEDAARITAAREAAGDDFIICIDANQ------GYKPAVAVDLSRRIADLN---IRWFEEPVWHNDKRSMRDV---------RYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIATSYDVQM-------GHHEEPQVSTHLLASQPHGTIAE......................... 191
33 -47.100d3sjna2 c.1.11.0 (A:129-373) automated matches {Shewanella pealeana [TaxId: 398579]}  ali model 3D-neighbors follow..  16  2.YRDKIRCYGTFIPADK---PEDNVAIVQGLKDQGFSSIKFGGGVMGD----DPDTDYAIVKAVREAAGPEMEVQIDLASKW-----HTCGHSAMMAKRLEEFN---LNWIEEPVLADSLISYEKL---------SRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCGGITEMKKIYDIAQMNGTQ--LIPHGFSTGILLHASVHFLAACEQGTLMEFSQSSSPLFTSLVKNQLQFDNGFVA 223
34 -47.100d5xd7a2 c.1.11.0 (A:131-362) automated matches {Vibrio sp. [TaxId: 1116375]}  ali model 3D-neighbors follow..  15  1.KNNTCKAYC--GGIDLQFPLEKLLNNICGYLESGFNAVKIKIGREN------MQEDIDRIKAVRELIGPDITFMIDANY------SLTVEQAIKLSKAVEQYD---ITWFEEPTLPDDYKGFAEI---------ADNTAIPLAMGENLHTIHEFGYAMDQAKLGYCQPDASNCGGITGWLKAADLITEHNIPVCTHG-------MQELHVSLVSAFDTGWLEV......................... 190
35 -46.900d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  13  2.YREEIPVYASFQSSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG------TSFKEDVRHINALQHTAGSSITMILDANQ------SYDAAAAFKWERYFSEWT--NIGWLEEPLPFDQPQDYAML---------RSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVR--ASAHAYDGSLSRLYALFAQACLPPWSKMK......................... 200
36 -46.600d4kema2 c.1.11.0 (A:142-390) automated matches {Azospirillum sp. [TaxId: 137722]}  ali model 3D-neighbors follow..  12  1VADDGVWVYAAGGYYYPGKDVKALQDEMRSYRDRGYRVVKMKIGGAP------LAEDLRRIDAVLEVVGSGDNLCVDANG------RFDIDTAIAYGEALKPYG---LFWYEEAGDPLDYALQAEL---------AKHYDRPMATGENLFSHQDARNLIRHGGMDWLQFDCALSYGLVEYLRTLDMLKENGWSS----RRVVPHGGHQMSLNIAAGLHLGGNES......................... 200
37 -46.300d4hpna2 c.1.11.0 (A:124-378) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  14  2.WRESVRAYATGSFRDNVDRVSDNASEMAERRAEGFHACKIKIGFG-------VEEDLRVIAAVREAIGPDMRLMIDANH------GYTVTEAITLGDRAAGFG---IDWFEEPVVPEQLDAYARV---------RAGQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVR--IVPHVWGTGVQIAAALQFMAAMTPDPVRV......................... 198
38 -45.700d4hnla2 c.1.11.0 (A:116-399) automated matches {Enterococcus gallinarum [TaxId: 565653]}  ali model 3D-neighbors follow..  12  2.ARTAIPAYTHAVADN----LDDLYHEIDRFLAAGYRYIRCQLGFYGGNQTDYMETTLKMFAAIKEKYGNQFQMLHDVHERL------HPNQAIQFAKAAEPYQ---LFFLEDILPPDQSHWLTQL---------RSQSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGITPALKLAHFCDAMGVRIAWHTPSDISPVGLAVNTHLNIHLHNAAIQE......................... 219
39 -44.700d4g8ta2 c.1.11.2 (A:134-442) automated matches {Actinobacillus succinogenes [TaxId: 339671]}  ali model 3D-neighbors follow..  10  18....GDRKKTTLAYQNQENDESVVRLAEAAYEKYGFNDFKLKGG------VLDGFEEAEAVTALAKRFP-DARITLDPNG------AWSLDEAVKIGKQLKGV----LAYAEDPCGAEQGYSGREIMAEFR-----RATGLPTATNMIATDWRQMGHTISLQSVDIPLADP-HFWTMQGSIRVAQMCHEWGLTWGS-HSNNHFDISLAMFTHVAAAAPGDITADTHWIWQEGNQRLTKEPFQIKGGLVE 254
40 -44.300d2poza2 c.1.11.0 (A:119-384) automated matches {Mesorhizobium loti [TaxId: 266835]}  ali model 3D-neighbors follow..  9  2.IRDRVRAYAN-GWYGAADTPDEFARAVERPLKEGYGALKFYPLAQRVMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGG------LTTDETIRFCRKIGELD---ICFVEEPCDPFDNGALKVI---------SEQIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAEAYNMR--VAPHVCGSSLIETATLQLEANITNFMIHE......................... 214
41 -43.500d4e6ma2 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella enterica [TaxId: 90371]}  ali model 3D-neighbors follow..  10  2.TNEKLRTYASQLKRHILVTPEEYAEAARAALDDGYDAIKVDPLESGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSL------LGTNSAIQFAKAIEKYR---IFLYEEPIHPLNSDNMQKV---------SRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTT--VQVHVCGGPVSTVAALHMETAIPNFIIHE......................... 227
42 -42.300d4k8ga2 c.1.11.0 (A:112-402) automated matches {Novosphingobium aromaticivorans [TaxId: 279238]}  ali model 3D-neighbors follow..  12  2.SRDGIMVYGHANGSD----IAETVEAVGHYIDMGYKAIRAQTGVPGIKDAKALNYVPKLFEELRKTYGFDHHLLHDGHHRY------TPQEAANLGKMLEPYQ---LFWLEDCTPAENQEAFRLV---------RQHTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLTHLRRIADLASLYQVRTGCHGATDLSPVTMGCALHFDTWVPNFGIQE......................... 228
43 -17.500d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}  ali model 3D-neighbors follow..  10  6....PVPAFNVINGRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGLENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKY-TGDQLGALYQDF--VRDYPVVSIEDPFDQDDWAAWSKFTANVGIQI--------VGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCT................................ 250
44 -10.300d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  129.........HELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTHEARIPTIATPVPRGAFSWVTRKL-KGHVSLPLVTTNRINDPQVADDILSRGDADMVSM................................................................................ 309
45 -9.910d3l5la_ c.1.4.0 (A:) automated matches {Pseudomonas putida [TaxId: 303]}  ali model 3D-neighbors follow..  11  142....KVP--REMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSV................................................................................ 323
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.