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Query: PF07959.12; W4YPG4_STRPU/114-532; L-fucokinase, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AGGYSQRLPSASLLGKIFTAVPYGRPIYQMLELILAMYIDLPAHMPSGGIFLACSDVIILYDCTVGVEWSFDKPGITAFGHPAPIAVGTTHGVFLYKDTPNVCSQVHIVECEEFLHKRSEDVLREKGVLLPQPCQQTLGISEDHVLVDSGYFMDGETAKKMIEFYEEKSPLSCEIDSHGDFLHGLGNCGNNSYINDMSNVSSKTDKLLSMRQEVFKLLQGTPLHVLVLPYSKFYHIGTTEELLSHFCDNCSLRRELSLTKDAFNRSVDLGDSNTVLDKCATREACIMDSIVPQGMDTSKPCIVEYCHFKSPCHLGERCIVSNCVVQAPSSGCPVSIPSFTFLHTAAVKTREGSTLYVTIFFDIRDNLKRSAPHLEEAGQLSFLNQSLQVLFNNFNSTSLQAIFPPGTTTFSIWNAKLFPLast
1 -16.100d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}  ali model 3D-neighbors follow..  12  18GGGAGTRLPLTKKRAKPAVPLPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETADITVAALPMDEKRATAFGLMKIDEEGRIIE---------FAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATMRVQAYLYDGYWEDIGTIEAFYNANLGITK............................................................................................................................................................................................................... 287
2 -11.400d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}  ali model 3D-neighbors follow..  13  10...........................................................................................................................................................................................................................................................................ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGAIGIGKNCHIKRAIIDK-----NARIGDNVKI............................................................................. 98
3 -11.300d1fxjb1 b.81.1.4 (B:252-326) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  8...............................................................................................................................................................................................................................................................................................RFDLRGTLTHGRDVEIDNVIIEGNVTLGHRVKITGCVIKNSVIGDDCEISPYTVVEDANLAAA..................................................................... 72
4 -10.900d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  9  8AGGSGTRLPATLAISKQLLPVPMIYYPLSTLMLAWGLDLQYAVQPSPDGALVLGDNLYYGHDFHELLGSASQRQTGASVFA-YHVLDPERYGVVEFDQGGKAISLEEKP-------LEPKSNYAVTGLYFYDQQVVDIA--RDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDT-------------------------------------------------------GTHDSLLE---------AGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETV............................................................................................................ 291
5 -7.290d1hm9a1 b.81.1.4 (A:252-459) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  11  11.................................................................................................................................................................................................................................................................................IDIDVEIAPEVQI-NVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEV-------GSSIGENTKAGHLTYIG................................... 116
6 -6.870d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  15  36..............................................................................................................................................................................................................................................................................................................LDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNIN....................................................................... 81
7 -6.820d1tzfa1 c.68.1.13 (A:4-259) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  11  6AGGLGTRLEETIVKPKPMVEIPVDTGDSSMTGGRLKRVAEYVKDDEA--FLFTYGDGVADLDIKATIDFHKAHGKKATLTA---TFPPGRFGALDIQAG----------QVRSFQEKPKDGAMINGGFFVLNPSVIDLIDNDATTWEQEPL............................................................................................................................................................................................................................................................................ 211
8 -6.800d3eg4a_ b.81.1.2 (A:) automated matches {Brucella suis [TaxId: 29461]}  ali model 3D-neighbors follow..  13  111...............................................................................................................................................................................................................................................................................CIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTATVGSCAQIGKNVHLSGVGIGEPMQAGPTIIEDNCFIGA------------SEVVEGC------IVREGSVLGMGVFIGKSTKIVDRATGEVFYGE.................. 228
9 -6.320d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  9  51................................................................................................................................................................................................................................................................................YVGKYSNVQDNVSIHTSEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILD----------GAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEE............................................ 148
10 -6.270d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Methanosarcina thermophila [TaxId: 2210]}  ali model 3D-neighbors follow..  8  1................................................................................................................................................................................................................................................................................TVDEFSNIRENPVTPWNPEPSAPVIDPTAYIPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEIGNNVQSQVHGPAAVGDDTFIGM-------QAFVFKSKVGNNCVLEPRSAAIGVTIP 159
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;