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Query: PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VGLLVAINTWSLYHQALRSADTAYDRTLLASAKSIGELLEVTGNSDALQVRANVPYSALEAFEADNRSRIFFKVSGFGGEMVSGFEDLPAWQGRIPVRGPYAALVDFYDDHYRGEPVRVAVLLQPVSGQAGQGMATIQVAETLELRQTLARQMLast
1 -7.320d2w27a2 d.110.6.2 (A:263-407) Hypothetical protein YkuI, C-terminal domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  4.........................ETVYEHSEQFYKRVHQAVTSLRKNNLSSDDDFIKKLAEELTDCSFRIYMCDEEGDQLTGNQDGEWIYQPEYAEKNWSWRPYFLENIMRMRNLRKGFFSDLYSDLE-TGEMIRTFSYPMDDQMYLFIDL 133
2 -7.240d3c38a_ d.110.6.3 (A:) Autoinducer 2 sensor kinase/phosphatase LuxQ {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  11  1...........TSVQTSSLIQSLFDFRLTAKNASLINALVSRDSSRLDEFFSSVDELELSN---------LRFISSHDNILWDDGNA-QQELNKLIRRVAISGNWHLVQTPSEGKSVHILMRRSSLIEAGTGQVVYLYVGIVLNDNFALLENI 151
3 -7.000d2hjea_ d.110.6.3 (A:) Autoinducer 2 sensor kinase/phosphatase LuxQ {Vibrio harveyi [TaxId: 669]}  ali model 3D-neighbors follow..  1...........SKQQTSALIHNIFDSHFNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSH---------FRFLTDHKGIIWDDGNA-DLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRRVPILDPSTGEVLFSFNAVVLDNNFALMEKL 151
4 -5.880d1xvha3 a.8.1.2 (A:4-72) Ebh protein {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  19...........NFLDADEQKRNAYNQAVSAAETILNKQTGPNTAKTAVEQALNNVNNAKHAL........................................................................................... 69
5 -5.840d3c8ca1 d.110.6.4 (A:63-300) VC_A0923 {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  12  93............YKDAKNAGKLVIDSASGEILVSVATPVKDSATGQFLGSDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKINVDTHQVIINGKPYAVSFSDVEGED------VVIDEEIAYAALDELRRS. 238
6 -5.830d2noca1 d.230.6.1 (A:1-91) Putative periplasmic protein YahO {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  15  6KVMLGALAFVVTNVYAAEIMKKTDFDKVASEYTKI-GTISTTGEMSPLDAREDLIKKA------DEKGADVVVLTSGQTE......................................................................... 78
7 -5.590d3by8a_ d.110.6.1 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  1.................DMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLL--FIVVTDMQSLRYSHPEAQRIGQPFKGDDILKALNGEENVAINRGFLAQALRVFTPIYDENHKQIGVVAIGLELSRVTQQIND. 133
8 -5.460d3rvca_ d.299.1.1 (A:) automated matches {Influenza A virus (a/udorn/307/1972(h3n2)) [TaxId: 381517]}  ali model 3D-neighbors follow..  14  4............YLTDMTLEEMSRDWSMLIPKQKVAGPLCIRMDQAIMDKNIIL-KANFSVIFDRLETLILLRAFTEEGAIVGEISPLPSLPGHTAEDVKNAVGVLIGGLEANDNTVRVSETLQRFA.......................... 117
9 -4.860d1ut9a2 b.1.18.2 (A:208-305) Cellulose 1,4-beta-cellobiosidase CbhA, precatalytic domain {Clostridium thermocellum [TaxId: 1515]}  ali model 3D-neighbors follow..  1......................................ILPQPDVRVNQVGYLPEGKKVATVVCNSTQPVKWQLKNAAGVVVLEGYTEPKGLDKDSQDYVHWLD--FSDFATEG---IGYYFELPTVNSPTNYSHPFDIRK............ 98
10 -4.770d2jnaa1 d.230.6.1 (A:1-96) Hypothetical protein STM0082 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  12  7AAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELA------DAKGGKYYHIIAAREH......................................................................... 80

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 0 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.