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Query: PF09859.9; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GEYRYFRYPLPDLLGGLRSALYPRLGEVANRWNERMAIPLRYPATHADFLDQCHAAGQVRPTPLLLQYVPGDFNCLHQDLYGDLAFPLQVAILLSEPGKDFTGGEFALTEQRPRMQSRVEVVPLRQGDAVAFAVHNRPVQGTKGNYRVNLRHGVSRLRSGMRHTVGIIFHDALast
1 -31.000d3ouia_ b.82.2.15 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  119......................................................................GTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIF--PEGKAQFADIEPKFDRLLFFWSDRR------------NPHEVQPAYA-TRYAITVWYFD. 204
2 -30.900d4j25a1 b.82.2.0 (A:2-206) automated matches {Pseudomonas putida [TaxId: 160488]}  ali model 3D-neighbors follow..  19  105..........................................................EDFECHFALYPPGAFYRRHLDRRDDDRRMVSAVLYLNEGWQPHDGGQLRMFLADGVEHD----VEPVAGCLVVFLSG-------------EVPHEVLPAGR-ERLSLTGWFRRR 201
3 -23.900d2jiga_ b.82.2.15 (A:) P4H-1 {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  12  38......KMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDPEHGGQRVVTMLMYLTTVE---EGGETVLPNAEQKVTGDGLAVKPIKGDALMFYSLKPDGSN-----DPASLHGSCPTLKGDKWSATKWIHVA 212
4 -14.900d4jhta_ b.82.2.10 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  17  83.........................................FHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSL--------GLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESR-----------LFYHGIQPLKIDCRYNLTF..... 196
5 -12.200d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  122....................................................................DSGKKTSRHPLHQRPSDLIVCAWTAMEHISRN--NGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDEKGDTVFFHPLLIHGSGQKTQGFRKAISCHFASA 243
6 -10.700d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}  ali model 3D-neighbors follow..  12  29.EMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIANYDRHLDDDFLASHICRPEICDRVESTEFFPKYPGDEGTDWHQAENEEFGGTITVWTAFTD--ANIANGCLQFIPGTQNSMNYDETKRMTYEPDAN-AVPMQMKAGQFIIFWSTLMHASYP-SQEMRMGFASRYVPS 256
7 -10.600d4p7xa1 b.82.2.0 (A:2-280) automated matches {Rhizobium loti [TaxId: 266835]}  ali model 3D-neighbors follow..  11  91..............................................................ARIIRISENACIIPHRDYLELEGKFIRVHLVLDTN----EKCSNTEEN---------NIFHMGRGEIW--------------FLDASLPHSAGCFSPTPRLHLVV---D. 169
8 -9.000d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}  ali model 3D-neighbors follow..  16  36.......................................................HGMKEVEVWLQTISPGQRTPIHRHSCEE-------VFTV------LKGGTLLMGSSSLKYPGQPQEIPFFQNTTF--------------SIPVNDPHQVWNSDEHEDLQVLVIISRP 126
9 -8.580d1e5sa_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}  ali model 3D-neighbors follow..  13  93..............................................................MARSRNLKNAIVIPHRDREVDRYFRTFMVLEDSPLAFHSNEDT---------------VIHMRPGEI---------------FLDAATVHSAVNFSEISRQSLCV---D. 174
10 -8.500d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}  ali model 3D-neighbors follow..  12  104........DLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGY--LKNAFYGSKGPNFGTKVSNYPP---LRAHTDAG-------GIILLFQD--DKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGK--------YKS-VMHRVIAQKDGARMSLASFYNPG 253

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.