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Query: PF10177.9; W5KY66_ASTMX/13-159; Uncharacterised conserved protein (DUF2371 topsan), from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RQDSLRTKNRAENKRRRKARKKRKNDIVVVKGKLNLCSVSGMAAAFGVLVLMVGIAMAVLGYWPRENLAHTVSLQRVNDATINSTKPIPPASRHVGFFEDFFSNYQYSDNLKVFGPLVMGIGIFLFICANAVLHENRDKKTKIINLRLast
1 -7.060d4p79a1 f.63.1.1 (A:2-186) Claudin-15 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  14  73.........................YVQGCRALMITAILLGF---LGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLYAGTKYELGPALYLGSASLLSILGGICV.............. 178
2 -6.690d3x29a_ f.63.1.1 (A:) Claudin-19 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  73.........................HIQSARALMVVAVLLGF---VAMVLSVVGMKATRVGDSNPTAKSRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGALFVGASAGLAMLGGSFL.............. 179
3 -6.670d3lo8a1 b.43.4.0 (A:8-156) automated matches {Maize (Zea mays) [TaxId: 4577]}  ali model 3D-neighbors follow..  15  87.........................................................SIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGP----SGKI....................... 149
4 -6.620d2rc5a1 b.43.4.0 (A:7-158) automated matches {Leptospira interrogans [TaxId: 173]}  ali model 3D-neighbors follow..  87........................................................VRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGP----SGKKFL..................... 152
5 -6.570d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  25....................................................GYTMSALLNATYNTNKYHAEAVGQQFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVD---GIAILGGHAMAVVG----NAKLNNGQEVIII. 138
6 -6.250d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  11  57...............................................WKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFAIFCRNVMIYFDKTTQEDIL... 154
7 -5.730d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  90............................................................................................................ESCDHTAPVHEG-----TLYSELHIESAQAHADGVLGLR 125
8 -5.660d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  85.........................................................................................................LFYRGLRFHRFPAVG-----TLYTRTEVVGLRANSPK..... 117
9 -5.620d4ffua1 d.38.1.0 (A:1-148) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  19  85...........................................................................................................YDRLRFVRPVHIG-----TIRTRVTIAAKEDDPKR..... 115
10 -5.620d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  18..........................................................................................................HFHDLPCGASVILGNNGFIWIYPTPVSLADREVISRLRNC. 73

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35