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Query: PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCFRTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEKIHAFTQLKEYANPSQQDRFVMRFDMNQTQVLFEIDGKVIDKCNLHRLLNVSENCIFKVMEEDEEELFLKICIKYGEKISRYPELLEGFANKLKDAVNEDDDVKDEVYKLMRSGEDRKMECVEWNGTLTEEEKNKLRCLQMGSFNITTQFFKIGYWELEGEVLFDMVHPTLSYLLQAYKPSLSSDLIETNTMLFSDVLNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNMLILast
1 -9.780d4xsqa_ c.10.2.0 (A:) automated matches {Branchiostoma floridae [TaxId: 7739]}  ali model 3D-neighbors follow..  10  8..............................................................................................................................................................................................................................TVSLYGEMVVACGGMGLTEIPEDIPHRAVYLVLKDNNITKITSYSFKGLRNLQGIDLSNNKINHISSAA-GHLDDIDLSRNELTSVSEKL....... 100
2 -9.780d3g39a_ c.10.2.0 (A:) automated matches {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}  ali model 3D-neighbors follow..  8  11.....................................................................................................................................................................................................................................TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV-TQLTQLSLNDNQLKSIPRGA....... 96
3 -9.410d4rcab_ c.10.2.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  67................................................................................................................................................................................................................HMENNGLHEIVPGAFLGLQLVKRLHINNNKIKSFRKQTFLGLDDLELQADFNLLRDIDPGADLNKLEVLILNDNLISTLPANV---ITHLDLRGNRLKTLPYEEVLEQI.. 180
4 -8.740d2v9tb_ c.10.2.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  38................................................................................................................................................................................................................RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNLVLYGNKITELPKSEGLFSLQLLLLNANKINCLRVDA-HNLNLLSLYDNKLQTIAKGT....... 147
5 -8.710d2o6qa_ c.10.2.0 (A:) automated matches {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}  ali model 3D-neighbors follow..  13  43................................................................................................................................................................................................................DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLELWVTDNKLQALPIGDQLVNLAELRLDRNQLKSLPPRV-TKLTYLSLGYNELQSLPKGV....... 152
6 -8.680d2wfha_ c.10.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  29...................................................................................................................................................................................................................................DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSNMTQLLTLILSYNRLRCIPPRT-KSLRLLSLHGNDISVVPEGA....... 118
7 -8.420d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  83................................................................................................................................................................................................................DLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQLYLKGNELKTLPPGLPTPKLEKLSLANNNLTELPAGL-ENLDTLLLQENSLYTIPKGFFGSHLL. 197
8 -8.250d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  11  61................................................................................................................................................................................................................ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL--RVHENEITKVRKSVGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS....... 190
9 -8.150d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  12  157.............................................................................................................................................................................................................................ELQNLPFLTAIYADNNSLKKLPDLP----SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPS-LEALNVRDNYLTDLPELPQSLTFL. 249
10 -7.810d2v70a_ c.10.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  39...................................................................................................................................................................................................................NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNILLTSNRLENVQHKMGLESLKTLMLRSNRITCVGNDS-SSVRLLSLYDNQITTVAPGA....... 145
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.