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Query: PF15935.5; I5B0B2_9DELT/91-316; RNase LS, bacterial toxin, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst HNNCITYRKIKQDDFELLLEYLDTEEAVKSESLEPYKTNNNHTIFKISSIYKDETTLTQYANQTILLQGRPLYIYNVIKSFINELIDFDQVVEIESDLYKIDLKPDVVREELESRLFAVYGRFDEKILKVMTPALSLMKIDVELEDYSCCIYPALRGLEGYIRMLLSEFSKEYKTVGRLGSLFDENKSYETMLFLKDDIKNDVVCKSLQNAYFMYVKHRHPLFHTDLast
1 -7.290d3u9wa3 a.118.1.7 (A:1461-1610) Leukotriene A4 hydrolase C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  31......LKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQE-----VYNFNAINNSEIRFRWL---RLCIQSKWEDAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDL............................................................................................... 147
2 -6.790d5c3va_ d.143.1.0 (A:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}  ali model 3D-neighbors follow..  9  108SDDEFIIKTVQHKEAEFLQTLLPG-------------------YFMNLNQNMRTLLPKFYGLYCVQADGKNIRIV--MNNLLPRAVPMHLKFDLKGSTYKRRASPKERSKGVPTYKDLDF-LLENDHYTALSRTMCRVLQSFKIMDYSLLV........................................................................... 248
3 -6.440d2g3ba2 a.121.1.1 (A:74-189) Putative transcriptional regulator {Rhodococcus sp. RHA1 [TaxId: 101510]}  ali model 3D-neighbors follow..  16  5...........................................................................DRLTRSLLGEIQDRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSL-DPQPTAVTMTALVEGLSGRWLCK.......................................................... 96
4 -6.240d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. RHA1 [TaxId: 101510]}  ali model 3D-neighbors follow..  8  5...........................................................................EKLRNITASILPLDERRLAMTRVFLFFYAEGAAEETARGEIAAFLARWRGVVRESVVAAQREGTVSTDL-DADAVTVALVALTDGLALQAILD.......................................................... 96
5 -6.210d2ybxa1 d.143.1.2 (A:35-405) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  104YDKRYIIKTITSEDVAEMHNILKK------------------YHQYIVECHGITLLPQFLGMYRLNVDGVEIYVI-----VTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKDYIDDNNKKVFLEKLVEFLAQLKLMDYSLLV........................................................................... 244
6 -6.120d3v8ha_ d.117.1.0 (A:) automated matches {Burkholderia thailandensis [TaxId: 271848]}  ali model 3D-neighbors follow..  12  156............DQLRDCLDTIVRDPSSRRILFHGWNPAVLDEIALLPNVERREISLCLYIRSNDVGLGTPFNLGAALLTLVGRLTGYSWFTYFIGDAHIYENQLDMLKQQLERELAERVPDYAKTGKYEPQWLERVEPSDFTLVGYR.............................................................................. 312
7 -6.090d4ez8a_ d.117.1.1 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  11  133............DQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALP---VNGELSCQLYQRSGDMGLGVPFNIYALLTYMIAHITGLQDFVHTLGDAHIYLNHIEPLKIQLQREPRPFPKLKILRKVETIDD---FKVEDFQIEGYNP--HPTIKM..................................................................... 283
8 -5.850d1ufba_ a.24.16.3 (A:) Hypothetical protein TT1696 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  13  2............................................................................................................................NRARDWLEQALRHAQGSLGLGDYAWACFAAQQAAEAALKGLHLARGQVAWGH---------SILDLLADLPEDVDVPEDLVEAAKVLDKYYIPTRYP..... 92
9 -5.680d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  14  3.........IKQTDYFRIYRVIN--------SLLISQNADPASASMYFSTFGAFILQQHYKVKAVPKGGLAAYNLGGTVLLFADHREDGYVTGAGENFH------------------------------------CWVEADGWAIDFMAPAFSALAVPAKMFQRPLSAMAASINDLGQSGDFFYRSEPEATARRFADWHKQAMIGDMASVAANWFRKSPKQM.... 175
10 -5.670d3zhoa_ c.23.5.8 (A:) automated matches {Escherichia coli [TaxId: 405955]}  ali model 3D-neighbors follow..  14  1....................................................AKVLVLYYSM-----YGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATP----------------------QELADYDAIIFPTFGNMSGQMRTFLDQTG........................................................ 94
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.