Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF17319.2; D1ARU2_SEBTE/23-116; Family of unknown function (DUF5362 topsan), from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst LKFIGLVQQIMGVLTIISGAIMCLTIIGAAAGVPYIIGALNIFKSGGAFGDTSRNESGESLREAIAGLAKGMKLMLIGFVIWIVLYILLMVVIMLast
1 -7.560d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}  ali model 3D-neighbors follow..  20  18.LFMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERPNEVIKGWTEALQLMREG................ 101
2 -6.670d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}  ali model 3D-neighbors follow..  11  27.THAPLTRKIPGLRDMKVTRIV-----SPMGESKFYLMCEMYYDDHESLQQAMRTDEGKASGKDAMKFAGKLLTLMIGEEM............. 102
3 -6.410d5xb0a_ d.26.1.0 (A:) automated matches {Pseudomonas syringae [TaxId: 223283]}  ali model 3D-neighbors follow..  20  15.TFMAGEKAKPGVKELADG-ILMTELTPGTGPKPDANGRVEVRYVGGKIFDQSTQPQWFRLDSVISGWTSALQNMPTG................ 94
4 -5.840d1adza_ g.8.1.1 (A:) Tissue factor pathway inhibitor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  37.....................................KQCERFKYGGCLGNMNNFETLEECKNICEDGPNGF...................... 71
5 -5.710d4ntwb_ g.8.1.0 (B:) automated matches {Micrurus tener [TaxId: 1114302]}  ali model 3D-neighbors follow..  10  31.....................................ITCVHFFYGQCDVNQNHFTTMSECNRVCHG........................... 60
6 -5.330d1dtxa_ g.8.1.1 (A:) alpha-Dendrotoxin {Green mamba (Dendroaspis angusticeps) [TaxId: 8618]}  ali model 3D-neighbors follow..  23  30.....................................KQCERFDWSGCGGNSNRFKTIEECRRTCIG........................... 59
7 -5.290d2odye2 g.8.1.0 (E:81-142) automated matches {Rhipicephalus microplus [TaxId: 6941]}  ali model 3D-neighbors follow..  25  32.....................................GECETFVYGGCGGNDNNYESEEECELVCKNM.......................... 62
8 -5.290d1knma_ b.42.2.1 (A:) Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain) {Streptomyces lividans [TaxId: 1916]}  ali model 3D-neighbors follow..  26  49...........GELRVYGD--KCLDAAGTSNGSKVQIGGDNQKWRLNSDGSVVGVQSGLCLDAVGNGTANGTLIQL.................. 115
9 -5.190d3mw6a_ a.136.1.1 (A:) Hypothetical protein NMB1681 {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  12  44...LGIDQDLIAALPQYDAALIARVLANHCRRPRYL-GGKRFDLNNRFKGEVTPEEQAIAQNHPFVQQALQQQ..................... 117
10 -5.180d1tocr2 g.8.1.2 (R:57-119) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}  ali model 3D-neighbors follow..  13  35..........................................VLAASCPSGENTFESEVECQVACGAPIEG....................... 63
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.