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Query: PF18719.1; A0A0Q3WY42_9BACI/40-166; ArlS sensor domain, from PfamA32U

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst IRQVMLHEEATNISQELSEIINFYKNRPFSSMEDIQNNSDIIKQLLEKDQTLYVLNQKLQGFAISKTDNKKPKSLIEYEPVKEKTVDLTTIDGRKIYVGRAPIVSNGFSGYIGVVDPLTRYHQMMTSLast
1 -6.360d1a5ea_ d.211.1.1 (A:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  19..........AAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-RLPVDLAEELGHRDVARYL......... 130
2 -5.920d3c38a_ d.110.6.3 (A:) Autoinducer 2 sensor kinase/phosphatase LuxQ {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  8LIQSLFDFRLAALRIHQDSTAKNASLINALVSRDSSRLDEFFSSVDELEDLRFISSHDNDGNASFYGIAQQELNKLIRRVAISGNWHLVQTPSEGILMRRSSLGTGQVVGYLYVGIVLNDNFALLEN 150
3 -5.730d2hrkb_ a.45.1.2 (B:) GU4 nucleic-binding protein 1, Arc1p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  28AAQWESVLKSGQIQPHLDQLNLVLRDNTFIVSTLYPTSTDVH..................................................................................... 69
4 -5.710d5xn9a1 b.60.1.0 (A:31-167) automated matches {Ramazzottius varieornatus [TaxId: 947166]}  ali model 3D-neighbors follow..  3.......................................................................................................TGKSWMGKWESTDRIENFDAFISA 26
5 -5.530d3lofa1 a.8.4.0 (A:534-613) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25LKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCN................................................................................ 71
6 -5.520d2hjea_ d.110.6.3 (A:) Autoinducer 2 sensor kinase/phosphatase LuxQ {Vibrio harveyi [TaxId: 669]}  ali model 3D-neighbors follow..  12  8LIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDEFRFLTDHKGDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIMLVRRVPISTGEVLGFSFNAVVLDNNFALMEK 150
7 -5.350d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  4FYHYLLKYRHPKPKDSISEFANQAYEDHSFTSTDYHEISSYLELNADYLHTMATFDE...................................................................... 62
8 -5.210d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  10  2...................................KTMKEKAVELLQKCEVVTLASVNKEGVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGDSVALMGEVEVVTDEKLKQELWQD 97
9 -5.200d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  4.........................................ALAFLSERHLAMLTTLRADNVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELR 93
10 -5.110d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}  ali model 3D-neighbors follow..  13  21VDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSHPTLHI-DVYGTIGLIFDMDPVRCAEYIA---------SLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITK....... 133

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.