FFAS03 results for PF02961

Query: PF02961.14; C3XZ01_BRAFL/2-89; Barrier to autointegration factor, from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 .`
#	Score	Template	Links and tools	%id	First	`SSTSQKHRDFVGEPMGDKPVTALAGIGGTLGGRLEEEGFDKAYVVLGQFLVLKKNEELFKEWLKSACNANSKQSGDCYTCLKEWCDAF`	Last
1	-62.000	`[BL] KOG4233 DNA-bridging protein BAF`	`ali follow..`	69	2	`SGTSQKHRNFVAEPMGNKSVTELAGIGETLGGRLKDAGFDMAYTVLGQYLVLKKDEELFKDWMKEVCHASSKQASDCYNCLNDWCEEF`	89
2	-7.410	`[L] COG3359 Predicted exonuclease`	`ali follow..`	17	1	`..............MLKNTYIHIPGVGKALEQKIWASGINSWDEFLEM........................................`	34
3	-6.520	`[S] COG3743 Uncharacterized conserved protein`	`ali follow..`	21	133	`..........MDKPAKPSDLKAISGIGPKLEKVLNGLGIWT----YAQIAAWSPQE---IAWVDDYLSFNGRIGRD------DWTAQ.`	196
4	-6.430	`[J] KOG3333 Mitochondrial/chloroplast ribosomal protein L18`	`ali follow..`	14	103	`.SASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEG-GVVLREPQRIYE.........`	179
5	-6.250	`[L] KOG2094 Predicted DNA damage inducible protein`	`ali follow..`	17	301	`.......KNAIMEFLKDLPIRKVGGIGRVCEAQLKAMDIQTVGDMN..........................................`	339
6	-5.870	`[S] COG4259 Uncharacterized protein conserved in bacteria`	`ali follow..`	20	63	`............VEAGNKKMNAAPGAHAHLGLLLSRSGKEGAFRQFEEEKRLFPESGVFMDFLMKTGKGGKR................`	123
7	-5.320	`[L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair`	`ali follow..`	22	169	`..........VPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDV...........................................`	203
8	-5.240	`[J] COG1491 Predicted RNA-binding protein`	`ali follow..`	15	116	`.................HQLELLPGIGKKHMWDILKA----------------REEKPFESFIKNRVPMLSDPVKLIVRRVLM.....`	167
9	-5.220	`[R] COG2384 Predicted SAM-dependent methyltransferase`	`ali follow..`	28	84	`............ENTDKIDTIVIAGMGGILISEILEAGKEKLGHVKRLILQPNNHEESLRQWLVN.......................`	136
10	-5.200	`[L] COG0322 Nuclease subunit of the excinuclease complex`	`ali follow..`	16	553	`......HRKKRDKARVTSSLSDIPGVGSK-----------RRQALLTRFGGLRGVIAASREDLEKVEGISKALAETIYNHLH......`	617

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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