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Query: PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein, from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EDLIVWQKAHQFVLEVYQITGNFPKSEIYGLASQFRRASISIPANIAEGFKKKGDLDKVRFMNIAQASLEECRYYLILTKDLGYANTSESMLKLQEVSRLLDSLast
1 -5.800[V] COG1968 Uncharacterized bacitracin resistance protein  ali follow..  18  156..........................QCLSLIPGTSRSGSTIVGALLLGVDKRAAAEFSFFLAI....................................... 193
2 -5.440[D] KOG1903 Cell cycle-associated protein  ali follow..  7  121........LMDWIEGLINDEEVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNYKHFYYFIREFSLVDQRELEPLREMTERICH. 216
3 -4.830[S] COG4838 Uncharacterized protein conserved in bacteria  ali follow..  10  15................................ALLKSDAEKIRKLIEVQLENLTMPQCPLYEEVLDTQMFGLSREIDFAIRLELIDEEQGKQLLSELERKLA. 84
4 -4.780[S] COG4121 Uncharacterized conserved protein  ali follow..  8  185KNPEMWNQ--NLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIA........................................... 242
5 -4.620[C] COG2224 Isocitrate lyase  ali follow..  15  121..........SVPAVVERINNTFRRADQIQWSAGIEPGDLPIVADAEAGFGGVLNFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAA 221
6 -4.620[S] KOG3682 Predicted membrane protein (associated with esophageal cancer in humans)  ali follow..  9  67.......KALKIVIQCSKLLSDTSVIQFY-VYERIFSMCVDSRSVLPDHFSNDTAKETCLNWFFKIASIRELIPRFYVEASIKFLSKTGISECLPRLTCMIRG 186
7 -4.610[J] KOG0466 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)  ali follow..  12  136.......................PGHDIL--AAVMDAALLLIAGN--ESCPQPQTSEHLAAI-----EIMKLKHILILQNKIDLVKERQAKEQYEQILAFVQG 213
8 -4.610[S] COG5454 Predicted secreted protein  ali follow..  14  5.............................GFLRFLPRIDSGSPMNALQG--RIVQEDHMPLLSVFAVYFIVWWTVLFIVLPIGLRTQDEEGDVA......... 67
9 -4.570[S] KOG4620 Uncharacterized conserved protein  ali follow..  7  7........................QRQVIHFYRRCLHAAKAKEQPYNERWMAFVHQEFRKNQTISKRDFFYIEHLL........................... 58
10 -4.550[R] COG1444 Predicted P-loop ATPase fused to an acetyltransferase  ali follow..  13  342...............AIDEAAGVPLPVLYAVHKKFNRLVFATTIHGYEGAGRGFS---IRFLKYLKEARDTDVYLYEMEEPIRYGRGDPVEEWLFDA...... 420
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.