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Query: PF08626.11; C0NZX0_AJECG/5-1447; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit, from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PLSPVAPARLRALLLPVGNIKRSRFLNLVKRLQDQNVVRLGDVSPDCRPNRNAFSPMAFPTGMIVYDLSISVPPISHLDLYPFEIFREPLVIIAIADGTELPGPPEGTGTYSQTQSNGTKPCNYPTVEGLQLLQQELNTLKDSHPKSLVQQLLVFDYAAVSKLVTGPDTVIWVPRPEAARSTTVKTVMCDITSRLLGELSGLAERIQEWPTVESPKASSWGPRRKPEVRPPVSEKLQHRMTMPAQLPGANGTFVDASDTNFQPAEHDSPTTFDEITRSIQVSNRVTSSIKASSKPGSKEHSRERMSAQGLGFVAASERSKSRVKGRLNIVMGTLFLQAGRWPDSLKELAEGATIARANSDYIWHAKALESILQCLLMLGWAGMDFRIPQICYPTADKFSKSVSQTPSLSHTELYSIGQSNPENRRVSLQNLANLLPDLANNILNLYTRAANITDEPVPQLVFSETVIRLARILATVYIRDGSLDDSALGNIVMNDSLKFVRSQERPRGTVSLRKSDIASFLFRALPASLGTDVPITDSTPILVGMASVLSSLGLDRKNAFVLQLLFSILIPGLVQARKIGAAEVGIHPAAGLSALNYSAFEMNALDAGPGNMEESIRILLALVGKIYGVPGIMICTDNRRDLSRHNSTAKSETVPEYDSVDSIVDRAFRHSVMNGFGDHTLKVEILKACINLCEALPDFQGVLQFTVDLLQTVKGTLMLLPDSYLGLPVIPLQEQVRLFNNVKRTVAAAKKLGDSNLEAEYWDDFMVRGVELVNSSDFKSPVRRSRTDFGFANVEERLEKKNPFIYSTFSKATTKRSEDLLIAEEPATFKVTLQNPFEFDVEIESLRIDGTGIPFEAAATHGLWLAPFTTQEYYISGVAATEGTLEIRGCTVKVKFCRERIFPIFKNFWKPQKEQKIKRTGLAAKEPFSERPLSWSSNASRSRLGASRKGPEPDIVLIKVIQKQPTVIIHSTSLSQSAIMLLEGETRSFDITLQNISTCPLDFISFSFEDSSTPQLQSALNNKENLPTDMYELELRLSTNPAMTWRRDKLHDYELSIAPGETATFTIDIYGKPGLDNAILKIDYANVCTSLADLPETFYCRQISLPLTVTVNAGVDVTRCDVLPFTSDFAWDNNKLQQSEDSRTSLGDKEAIKSMESSSTPRSITQFREAQFSQTFSRIGLSSFGFGHCLLLLDLRNAWPNPLTVSLFVNENISDGAKSPDDKLKHNPVGIHEIFDELQPGHISRFLLVVPRVYIENAQKPIPSLNVSNKRQFVVSANKLDYEAESSARECFWFREELLKHLRGSWKDVATGRGGVIDLRAIRLNARMVDALRIDDADVTFSLRPYTGDSSNDKTIENGIDSVSQTGHSKFTVKTNTFLTLSATIINRSSKPIHPLLRLQPSLRHTPHAIALDLSKRLAWSGMLQRALPILEPHQTTEVTLGVLast
1 -17.700[M] COG1361 S-layer domain  ali follow..  22..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AQGPELLYEGYMNKGDY-----LLVGPLMILLKDVVGKWKGVFIVKVRTLLQNQTFLRAMAETLGYNPDNPIEYAEFLRWLSTASQMEIWNAIVKTIDEHPELGIRLEDISKPYYVPNARPVGVNETIKIEYRGKTVYITVLSAYPNGVKVSISGPI-----ASMVQGLLLSKIDVKGT---IKPGQYFTVEVHLKNIGSRKVRFVTAVLSPTPVVPSSTKFKTEEESLATTVPQVLTQTGTIQGTLYPVESSVKFILIEPGEDKVIKFLYKAKPGDYPLYLTVIYFAYTTGENLEQRTL---YDTAVVTVARDYEANFIIVQNVPINVTFKNMGEDPAKDVRGTLILEDITGRVFTPVSPSNFYRKFVDPGMEFNETFKLHVSESAKT---------GTYTFKIRLKYYSGNSNQEKTQDFTISTTVIRRREAFIEEKIEPGTTFNITLRLRNLEVRIVPTKALVRREIKKVDLSQLSNLPIPGGKELAKNLQTALNQVIGQIAQE-GEDNVKYNGVIM-IEIHFTLKANERLENNIYPIKIEIKYLSSPDDKLISDEEKLVISSISTSPSRILPGTSNVEISFKIENVGDGKAD--III---------MPNPQFPFKLSETSDQIINVGSLGKGDSAQASFKV 711
2 -15.400[S] COG1470 Predicted membrane protein  ali follow..  184............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FYPYSEVTTEVNRSIMLPLTIFNTVNVTFSVVNA---DVKFYYQGIEIKKLKLREKESITLQLKVLPSSAGSHVVK------------------------------------------------FSINGDIYSFYVNVVQPKMEALKITAPILVQEAE------------AGSKVTFSVLLSAGEDSVIS-MDVREPRDWKACILV-----------------------------DGVRAQEIYLRRGETKVVNLILEIPRNASLGYYESKISFTVRKSNGEVIKNETITLGVNIYKTYKGQKATLKLILVDLEVEMNPGKYVITIEKEGYETKKEEVELGDGEKKELKLLLVREPYYFNVEAQSDIYPIVMEGLSRPFTIVIENLGKSDDEYKLEIRGIPENWNAFFTESAEGNIE----TKVKVKSGETKTVYLKVY----------PSLNAMPGTYNATITVISSSGIKKEIPVKI----------------------IGSYNM-NVNLLNYRLTITAGEEKTAMMDIFNFGNAPLTNLKITVKGPQVKVDPSQIPSLSPKGRERVTITVKGTPAGDYRVQITVKADQAEWQDTLRVVVRQRSTYIGVLILIIS.............. 714
3 -10.700[DO] KOG4322 Anaphase-promoting complex (APC), subunit 5  ali follow..  28..DWVTPYKIAVLVL----------------LNEMSRTGEGAVSLMERRR------------QLLLPLLQGPDIT----------LSKLYKLI-----------EESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVV---------------------------LFLRHMILAYSKLSFSQVFKLYTALQQYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVREEEVSCSGPLSQKQAEFFLSQQASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHDRLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLSLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNSIEGVYRKAVVLQAQN-QMSEAHKLLQKLLVH-CQKLKNTEMVISVLLSVAELYWRSSSPTIA-------LPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIP-----------EQALSLLHMAIEPILADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAA----------------IENLNEAKNYFAKVDCKERIRDVVYFQARLYHTLGKTQERNRCAMLFRQLHQE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 743
4 -10.700[S] COG5608 Conserved secreted protein  ali follow..  11  26..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FSPTVRGEWGPMEGNNVEIIVDLGNPSPIPVAVQSLNLSLAGVEIRIEQAKIGIFERSTNVVAVVNLDKIAEALVNHI-------------------KDKENSIAEINANIKVLGFIPIKYSKTIPVKTNILSFLQNVTAEPRVYSLGMIPFKTPGIEGIYARWGKVST---KEIELVGTIKLYNPNSFPIPVTNLKAD---------YMNNIKIGEGRT---------------------LKGTILQPNSRGTVDVALTFDVEKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIETTFETNIL................................................................................................................................................................................................................................................................................................................................ 290
5 -9.730[R] COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain  ali follow..  1......................................................................................................................................................................................................MSSQAEPSKGASNADPNEKVEKMHLPTDTAGGGVKVKVKEQEASPSDKNNLNPQSAGVSEVQQDDTGARGSGARDLKVPKQMQAPKSSEEKSDVDGVPTRPVSERELRKRDAMQFIQRHQKVRNILAQYCPWLTDERLQLCIELKILQHFQDSRLVLYTA--MSFLFGYLRGFLSLFIIMAVCIQYYRICDRRVKVNFKDDYTRYLSTRKLENDSETVNTFLQQFWYIFEPSLSERITEITDQIL----------SENVPSFIDS---MALSEFTL------GTKSPRMGFIRSYPKTEEDTVMMDSPNDISDLTGREIAACIKPKIALDLKEDLSFTGNLRVKVKLIDKYPYAKTVG--TFTEKPVFSYILKPLGGDKFGFDIGNIPGLTTFITEQIHNTLGPMMYSPNVYELDIESMMGAAGLNTALGAVEFKLRKGDGFKDGLGGAVDPYVVIKNSADRVIGKSKVAHNTGSPV--FNESVLNSFSENLNL--EVYDFNDIRS-DKLLGSAVLPLATLEAMPVTNDAFVELTLKGKTVGRLNYDMKFHAVVPDSGEEITKVDGPGVLQFTVHQ---------------CKELSNDPSKRPTAYA-------------KLIINNKEVYTTRKIKNPSSFGTLLPEGKNATLGVQIFTEESEHPF------------------GTANVS---------------LQDLFAATKTGLLWFPLQHAPSGRVRMSVMWKPAQLNNDSISSMALATPIGAIRIHLRSANNLHSKIPGKKCDSYARIMSHNTKQFRTVVIASNVNPFDIFFLQVMNYNSSGEDKLIGQTPINISNFIN---------------QGENGALMEYHDPRELTVPLSSTRGIKGNA--------------------------TITFKCDFFPSAVTTSLSPDVTPAPKASSTVATDKVNSQKTPTAVDNTSTSRGSTSVKTSKPKKISELLMPSEAVNAALDFESGFMGFDIISYKIAKPAQELAIFLDDLPHHIFLSSALNVTGGATLHEYGNTFIRQLEYSQCTFKLLDGDKEVGSKTMLSRDLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE------EVEMYENMGEMTVDVIKATDPAADSNGKSDPFVVFELQGEEVYRTKTHKRTLNPT----NESFEVELPCKQTCNFVANVFDWDFGNKDDHL------------------------GSCVIDCKLLQQQQQTNYEIPL 1139
6 -9.720[U] KOG3317 Translocon-associated complex TRAP, beta subunit  ali follow..  13  48............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLSEDETRARLLVSKQILNKY---LVEKSDLLVRYTIFNVGSGAATKVRLV--DSGFHPEAFDVVGGQPTAV---------------------------RIAPQTNFTHVLVVRPK---AFGYFNFTAAEVSYKAVEESETLQLAVSSEPGEGGIVNLNEYNK.................................................................................................................................................................................................................................................................................................................................... 177
7 -9.360[W] KOG4802 Adhesion-type protein  ali follow..  183.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PLKPRKELRFTELQSGQLEV-SIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVY-EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQD-LSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLS--IVQDVNITGHFSWKMAKANLYQPM-------------------TGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLYRLEVQVLTPEGPATIKTFRTPELPPSSAHRSHLKHRHPHHYK...................... 674
8 -8.710[K] KOG2578 Transcription factor E2F/dimerization partner (TDP)-like proteins  ali follow..  10  1.......................................................................................................................................................................................MEVNCLTL-KDLISPRQPRLDFAVEDGENAQKENIFVDRSRMAPKTPIKNEPIDLSKQKKFTPERNPITPVKFVDRQQAEPWTPTANLKMLISAASPDIRDREKKKGLFRPIENKDDAFTDSLQLDVVGDSAVDEFEKQRPSRKQKSLG---LLC-RIYDIVNVL-ESLHLVSRVNQYGWHG--RHSLPKTLRNLQRLGEEQKYEEQMAYLQQKELDLIDYKFGERKKDGDPDSQEQQLLDFSEPDCPSSSANSRKDKSLRIMSQ-------------------KFVMLFL--------------------------------VSKTKIVTLDVAAKILIEESQDAPDHSKFKTKVRRLYDIANVLTSLALIKK...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 350
9 -8.670[S] COG1729 Uncharacterized protein conserved in bacteria  ali follow..  41..................................................................................................FHLPSLELPSLFGDKKKPDQVQFAQQSNGAGATGLEDQLRQMNGK--------------------EELNFQILQMQEQMRKQQEDNEFRFQQLEGGAQGGQPPAPKKSDATTNTNTDVAAAPATQAPADAGAAPGGNQSAGGKTVEDVIVESPEGDPGKVIPGTGAPEKTFGSITVDKNGNVIDAGGNTQSTAPTQDAAPATKAPAKAGKSNGTIVAALPSTNDPEELYR--NSYQFILSGDYGTAEQGFRDHISR-KAADAHYWLGESL-----------LGQQKYRDAA-----------------------------------------------EVFLAASKDYPKAKKAP----------DMLLKLGVSLVGLKQHD--VACATFSEVGKRYPDISSALKERVK........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 362
10 -8.360[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  553.........................PLWLRQKTIQMIDEFSDVNEGEKELMKLWNLHVMRHGIACEMFLDAKGTVRKNLYRNFILHMCSLFDYGLIAAETVYKTVQKLQGLLSKYAAGQELMQRQREEQLKYWLDVGMHKKQEDPKTLKSP----PAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEP--------------------TATKAITIHCQ----------------------QPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVASAPGYRCR...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 922

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.